RNA id: TU169954


Basic Information

Item Value
RNA id TU169954
length 333
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G115098
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21388815 ~ 21389147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTATACATTTGGCATATGAAATGACGGGCCACATTGCTTTGGTTTATGTCATACAACATCTATACAACATTAAGCTGGCTATTATATCACTCTGCAACCAGCTTATTGCTCATCcaaattctaaaataaaccacaaataaaattaGCCACTGTCGACTTGGGAGTCATTTAAACTGTCCTTTCTGTCACTCCTGTGTTCCTAGTTCAATGAAAGCATGATAAGCAAACTGTGTCCATGTGAACTGGCCTTTGCAGACCTTATTGTCATTGAGCCGGTGATGTCCGCCTCTCCACAGACCAGTCCATAACTAATGCAAATGATAATGCATT

Function

GO:

id name namespace
GO:0016832 aldehyde-lyase activity molecular_function
GO:0004332 fructose-bisphosphate aldolase activity molecular_function
GO:0004064 arylesterase activity molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00680 Methane metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169865 lncRNA downstream 57457 21331012 ~ 21331358 (-) True G115051
TU169853 lncRNA downstream 74069 21283464 ~ 21314746 (-) True G115042
TU169793 lncRNA downstream 268231 21118149 ~ 21120584 (-) True G114997
TU169792 lncRNA downstream 268275 21118149 ~ 21120540 (-) False G114997
TU169735 lncRNA downstream 553580 20781803 ~ 20835235 (-) True G114947
TU169974 lncRNA upstream 216833 21605980 ~ 21614179 (-) False cenpw
TU170024 lncRNA upstream 436051 21825198 ~ 21825437 (-) True G115155
TU170039 lncRNA upstream 484679 21873826 ~ 21874051 (-) True G115170
TU170171 lncRNA upstream 841093 22230240 ~ 22237066 (-) True G115262
TU170280 lncRNA upstream 1294280 22683427 ~ 22683638 (-) True G115335
XM_043261010.1 mRNA downstream 23614 21360793 ~ 21365201 (-) True LOC122360424
XM_043260618.1 mRNA downstream 42215 21333650 ~ 21346600 (-) True nagpa
XM_043260869.1 mRNA downstream 58824 21322911 ~ 21329991 (-) True tp53inp1
XM_043260273.1 mRNA downstream 67728 21315779 ~ 21321087 (-) False ccne2
XM_043260272.1 mRNA downstream 67728 21315779 ~ 21321087 (-) True ccne2
XM_043261819.1 mRNA upstream 16116 21405263 ~ 21408968 (-) False cfap418
XM_043261820.1 mRNA upstream 16481 21405628 ~ 21408967 (-) False cfap418
XM_043261821.1 mRNA upstream 16816 21405963 ~ 21408964 (-) True cfap418
XM_043260351.1 mRNA upstream 20812 21409959 ~ 21411771 (-) True mettl6
XM_043260090.1 mRNA upstream 23721 21412868 ~ 21431807 (-) True rspo3
TU169949 other downstream 9979 21375890 ~ 21378836 (-) True G115093
TU169801 other downstream 371710 21012607 ~ 21017105 (-) True G115003
TU169673 other downstream 735241 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 936365 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 936365 20441965 ~ 20452450 (-) True G114793
unassigned_transcript_2161 other upstream 19797 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 20813 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 21144 21410291 ~ 21411772 (-) False mettl6
TU169979 other upstream 171074 21560221 ~ 21561060 (-) True G115116
TU169980 other upstream 171074 21560221 ~ 21561216 (-) False G115116

Expression Profile