RNA id: XM_043261867.1


Basic Information

Item Value
RNA id XM_043261867.1
length 2777
RNA type mRNA
GC content 0.40
exon number 5
gene id cdc42se1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22892102 ~ 22901187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCTCATATTAATGGGGGAAACTTCAACCACACCTCAGCGATCTGGGAAACACAGAGTCATTTCCACCCTCAGCTTTCCACACAAGAGTTGCTTCACTCCAGCCGCTCACTGGGGCTCTCGGTTTCACCAAAGATTCGTCTGTAACCGCTCTGCCTCGCATAAACCCCACAGTCCAACAGGATCAACTGGAAATCGGGGACCTAGAATAACTGAGGGAATAAGgggtcttgtgtgtgtgtgtgtgtctaaatatatatatacttaaagcAGAGACCTCAGCATTCTCTCAGTGATCAGGACAGAGGTTTTTGGACGAGCCACGGCTTATATCACTGAGTGTTGAGGATTAGATTCTCTCTCTATCTTGTCTCTAAACGGCCTGCAGGGTGgcgagagagaggggggaaccCAACCGGTGCATGCCGGAGATGAGTGCGTTCTGGCATAAGATCGGCTGCTGCGTGGTAGCCAAACCTCCTCCGaaaaagaaacgGAGGAGAATTGACCGCAGCATGATTGGAGAACCCACAAACTTCGTTCATCTGACACACATAGGCTCTGGCGAAATGGCAGATGGCATGCAGCCGTCTGGCCCAATGCAGGAACAAATGAGATCCAAAGTGCCTCACGCTAATGGACGAAACAGCTTGTTATAGCCTCTTCACCAGTTTTTACCCCCCCCCCCCCATAAAGCTCCATAAAGTGTCCACAGCAGAACGTGTCCGGCTAGCAGCACCGCACCAATGTAGGAGGATGTAAAGACCGCATCTCTATCGCAAAACACGACAACCTCCTTGCTGCAGCTACCGACTTGGACGCCACCtctgcaggttttttttaatcttttggaTCTTCTGGAATGTCTCAGTGGAGACGATTGTGCCCTTCTTTTACTCTAAGACTGTTATTACATTTGGACCGGAGTGTATGCGAACGCCTGACAAAGAGTGTGAATGTGCGACGTGTGCGTTTGACACACTGGCTGCGCTTGCTGTGGAAGAGGAAAGGCTCTTATCACTTTAACACAGGGGACTATTTGACTGCCTTCCCAAAGTTATAACTGGCGTGTTTGTCATAGTCTGTCGTTGATAAGGatgtgcgcgagtgtgtgtgtttgcttttgttttgtaatgaaaatatatgtgCACCTATACCATTATAGTGTCTCCAACTGCTTGTCTTTAACAGTTGCACAAATGAGTGTATTATACAAAGCCCTCTGGTATGTGTATAGTAGATGAATATAGTATGAAAAAtggcttcttcttctttttttttttttctctacattAACACATAATGCATAATGGCCTTTGAAACTGGTTTTAAGGAATAAAAATACTCATCCACCAAGTCATTTCAAACCCATACGCTCTTAAAAGGTGCTTCAAGATGCTGTAGAAGAACGTTTATGTCCAAGTGGTTCCATAAAGAAACATCCGAAGAGCATTTGTTATTTGTGACCAAAGAACTTCTTctgattataaaaaggtaagaatgAGATgattctttgtggaaccaaaaaggGTGCTTTTATGGCattgctgtgaagaacctttttaagCACCTTTTTATTGCCTTTTTTGGTATTTATTCGTACAACATAGTGATATACTGTATAagctataaaacataaaaaggacACCATCATGGTGTGTAATGTTTTCAGGATTTGCTTCATGTGAGGaacagaataaatgaatgtCACTAATCACTGATAATTGTCCCCTCGAGTGAACTTTTAACTTGAGAGAAGCAATAATATGGCTTCAGACCATTTGGATTTttgaggacttttttttttttttttttttttttttaataattattttagggTCCAACAGGTAGGCACTCATAAATCAAcatgaatttttgtttttttaatgacgaggggtgagtaaatatttttttttttttaggtaaattATTCCTTTTAATCGTTAAGTATTAGAAAAGGCCATTATCTGTTAATCTGAGTGGAGACTTTGACCGGCAGCGAGCCACTGCCCTTTGTCATTTAAACATCACACTTAGTGTCACTTTCACACATCAAGCTCCACCCCACACCGCCTCAAACACACGCTCTCTGTTTCCAATCCTCACATGGCACCATGATTAAATCACTGattctcacacatacacacactttgtATACTTTTTACTTTgctctgtactttttttttttttttttttaaatgcagctcgATGTGGCACAGAATTGGGCTGAAAtgttaaacaatgttttttgcttgtaattgtgatgttttatttcaaatgcattgcTTTGCGAGATCCCAGACTGTAATTTACTTTGTGTTTGCTGTAATTTGTTAGGACATGTCATAGGAAAATATGTTGAGATTGTGCATGTTGCTTTAGAAATCCAATGTTTTAGAGTATTTTTAGTGGACTTGCATTTCATTCTTAGCTGACGGTATAGAGAAACGTGCATCTCCTCCAAAGACCTCGACAGCTCCCTTAATTTAATTCTACATGTGGCTTGCAGATTTTCTCACTTTCTGGTTTTATGTGACTGTTTggccatttttttaagtttttttttttgcaaaagcacttttttgtctttactacttttccttttattctatacttttttttttttcttctttcttttttaaagcatcTGTTAGTCCaaattattgttttggtttaaatGGGAGCAGTAATAGTGTTCTGTTCATATGGCATGGTGTTATGTTGATGAATCCTCTTGTTGTGTTTGGTTTGTAACAATACAGTTGTACAAAGAGcaa

Function

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170565 lncRNA downstream 4101 22885715 ~ 22888001 (-) True G115536
TU170525 lncRNA downstream 118070 22773766 ~ 22774032 (-) True G115496
TU170280 lncRNA downstream 208464 22683427 ~ 22683638 (-) True G115335
TU170171 lncRNA downstream 655036 22230240 ~ 22237066 (-) True G115262
TU170039 lncRNA downstream 1018051 21873826 ~ 21874051 (-) True G115170
TU170586 lncRNA upstream 9692 22910879 ~ 22911323 (-) True G115548
TU170604 lncRNA upstream 57497 22958684 ~ 22960933 (-) True G115559
TU170633 lncRNA upstream 95772 22996959 ~ 22997389 (-) True G115579
TU170635 lncRNA upstream 98974 23000161 ~ 23000665 (-) True G115581
TU170636 lncRNA upstream 100828 23002015 ~ 23002827 (-) False G115582
XM_043261414.1 mRNA downstream 77007 22812569 ~ 22815095 (-) True si:dkey-23o4.6
XM_043261382.1 mRNA downstream 95082 22779235 ~ 22797020 (-) True plekho1b
XM_043261187.1 mRNA downstream 124814 22763204 ~ 22767288 (-) True mrap2a
XM_043262106.1 mRNA downstream 368352 22419870 ~ 22523750 (-) True tsnare1
XM_043262107.1 mRNA downstream 368352 22420799 ~ 22523750 (-) False tsnare1
XM_043260054.1 mRNA upstream 14780 22915967 ~ 22929917 (-) True LOC122359864
XM_043260164.1 mRNA upstream 76738 22977925 ~ 22982891 (-) True LOC122359931
XM_043261710.1 mRNA upstream 163558 23064745 ~ 23072189 (-) True LOC122360867
XM_043260337.1 mRNA upstream 180042 23081229 ~ 23089594 (-) True LOC122360042
XM_043260604.1 mRNA upstream 188770 23089957 ~ 23096651 (-) True LOC122360196
TU170138 other downstream 803048 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 923567 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1088298 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1187143 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 1330886 21560221 ~ 21561216 (-) False G115116
TU170599 other upstream 31440 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 618621 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 686998 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 768711 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1425520 24326707 ~ 24327973 (-) False phactr4b

Expression Profile