RNA id: TU170604



Basic Information


Item Value
RNA id TU170604
length 1091
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G115559
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22958684 ~ 22960933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttgcttttgaatgcaTGCTCCATCACAGCAGTCAAATGctttattatatcatttcaaCTGAAGgagatttatttacattgcacattttagatttttttttttatatttcctaGTCAGGGAGACAATAGTGTAACAAAGCAACAATCACATTATGAAGATCAAATATATCCTCCACAAAGGCACAGCGACATCTGACAACAACCAACCAAATAAAAAAGAGCCATAACAGTGAGCCTTTTAGATCATTTAGAGCATTAGACATTCACATGACTTTCACAGTGCCCTCAATCTGGTTTGATTGACCTTACACAGCATTTGAGTAAATGCAATTGCTGTTGTTGATGGTCTCCACTTGATGAGAGCGAGCGATGAAGGTAACAAGCACGTTCTGGAGCATCTCGGCTCTCATCTTGCTGATCTGCAGCACCTCCTCGTGATTCACCTTCTCCTCGCGGCTGTAATCCAGAGAAACCTTGTTGGTGATGAGAGAGAGACCCAGGACCCGCAGTCCGCAATGCTTGGCTACCGTCACCTCAGGAACCGTGCTCATGCCTGAGAGGGCAACAGAGTCACTTCCCAAGATGTGCAGCATGCGTGCTTCAGCGATGGTCTCAAAGTTGGGTCCACTAACCATACAGTAGACTCCCTCATGCACAAAATTCAAGTAGCCCAACTCAGCAGTTATGTCCAAAACCAGTTTCCTCAGGTCTTTGCTGTAAGCGTCAGACATGCAAGGAAACCGAATCCCAAATCTGAGGAATAGATGAAAAAACACACCATCCTtgctataaaataacaattctgtaaTACAATATCCAGtgcctcctctctctctttttttctcccttctcTGCATACCGTTCATCATTGGGTCCGCACAGTGGGTGCTGCCCAGCAAACCCTGGCAAGTTAATATGGTCCTTAATGACCATGATGTCTCCCACTTTGAAATCCTGACAAAGACCTCCAGAGGCATTTGTTACAACAATGGTCTCTACACCCATCAGTTTGAAGATCCTCACAGGGAACGTGACCTGGAAAAAATTCCACAGAAAATACAAGCTGTTACTGCACGGAACCTCTCTGACCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170586 lncRNA downstream 47361 22910879 ~ 22911323 (-) True G115548
TU170567 lncRNA downstream 57546 22892106 ~ 22901138 (-) False cdc42se1
TU170565 lncRNA downstream 70683 22885715 ~ 22888001 (-) True G115536
TU170525 lncRNA downstream 184652 22773766 ~ 22774032 (-) True G115496
TU170280 lncRNA downstream 275046 22683427 ~ 22683638 (-) True G115335
TU170633 lncRNA upstream 36026 22996959 ~ 22997389 (-) True G115579
TU170635 lncRNA upstream 39228 23000161 ~ 23000665 (-) True G115581
TU170636 lncRNA upstream 41082 23002015 ~ 23002827 (-) False G115582
TU170637 lncRNA upstream 41216 23002149 ~ 23003118 (-) True G115582
TU170639 lncRNA upstream 43954 23004887 ~ 23005837 (-) True G115583
XM_043260054.1 mRNA downstream 28767 22915967 ~ 22929917 (-) True LOC122359864
XM_043261867.1 mRNA downstream 57497 22892102 ~ 22901187 (-) True cdc42se1
XM_043261414.1 mRNA downstream 143589 22812569 ~ 22815095 (-) True si:dkey-23o4.6
XM_043261382.1 mRNA downstream 161664 22779235 ~ 22797020 (-) True plekho1b
XM_043261187.1 mRNA downstream 191396 22763204 ~ 22767288 (-) True mrap2a
XM_043260164.1 mRNA upstream 16992 22977925 ~ 22982891 (-) True LOC122359931
XM_043261710.1 mRNA upstream 103812 23064745 ~ 23072189 (-) True LOC122360867
XM_043260337.1 mRNA upstream 120296 23081229 ~ 23089594 (-) True LOC122360042
XM_043260604.1 mRNA upstream 129024 23089957 ~ 23096651 (-) True LOC122360196
XM_043260608.1 mRNA upstream 136334 23097267 ~ 23102702 (-) True LOC122360198
TU170599 other downstream 24717 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 869630 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 990149 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1154880 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1253725 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 558875 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 627252 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 708965 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1365774 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2706886 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile