RNA id: TU171098



Basic Information


Item Value
RNA id TU171098
length 1129
RNA type TUCP
GC content 0.51
exon number 5
gene id mchr2a
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23668065 ~ 23675345 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCGCGCGCTGGTGAGAGTGGAGACGCCAATGCGCGCTGTGTGGTTTGATGAGGATGCTGAAACCCACGAGGACTTTCTATGAACAGACAAGTGCATGTGCCGTTACCGCATTTCAGCGCATTCTCGTCGATTAGAATGAAACGCAAATGATGAACGCCATGGTGGAGTTGGAACCTGTTGTTTGGAACTTTACgctcaaattagaaaacagcACGCGCGCTAATGAGACAGCAGCAGTTTATCCCGCGGACGAGTATTATAACATTGTTCACGTCACGGAAACTAAAATTCTCCCAGCATTTATTGGATTTCTGTGCTCCACCGGGCTTGTTGGAAATATTCTTGTTTTGGTGACTATTTTAAGGTCTGCTAAAAAAACTGTGCCAGATGTATACGTAGGCAATTTGGCGGTGGCTGACCTGGTCCACGTGACGGTCATGCCGTTTCTGATTCACCAGTGGGCCCGTGGAGGGCACTGGGTGTTCGGCAGCACACTCTGCACCATCATCACCTCTCTTGACAACTGCAACCAGATACCTGGCCCTTGTTCATCCATTTCGCCTACTGAGCCTCAGGACCAGATCCAGGACGATCCGCATTAACCTGTTTGTTTGGGCGGCCTCTTTCATCATGGTTCTGCCTGCCTGGATTCATGCCAAAGTGATCCGCTTCAGAGACGGGCTAGAGAGCTGTTCCCTTAACCTGGTCTCTCCCAAAGAAGTGCTCTGGTATACACTCTACCAGACTGTGACGTCCTTCTTCCTGCCATTACCTCTCATTCTCATCTGCTATATACTGATTCTCTGCTACTCCTGGAGAATGTATCGCAAGAACAAAAAGGCTCACAGGTATAACACCAGCCTGCCTAGAGAGCGTGTGGTCCGCCTCACTAAAATGGTCCTGGTTCTCGTAGCGGTTTTCCTGGTCAGTGTTGGGCCGTACCACGTCCTGCAGCTGGTTAACCTGAGCATACCTCGCCCCTCATTAGCATACCACACCTGCTACTATCTGTCTGTGTGCCTGAGCTACGCCGCCAGCAGCATAAACCCCTTCATCTACATACTGCTGAGCGGACACTTCCGCCACAGGCTGGTCTCTCGGGATACACCCAGCATGCCAAGTGTGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 342005 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 480248 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 501958 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 592028 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 140599 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 141602 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 145221 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 145221 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 145554 23820852 ~ 23822288 (-) True G115914
XM_043260939.1 mRNA downstream 60064 23582993 ~ 23609834 (-) True usp45
XM_043260065.1 mRNA downstream 90017 23572971 ~ 23579881 (-) False pnisr
XM_043260063.1 mRNA downstream 90017 23572971 ~ 23579881 (-) False pnisr
XM_043260064.1 mRNA downstream 90132 23572971 ~ 23579766 (-) True pnisr
XM_043260068.1 mRNA downstream 97581 23567058 ~ 23572317 (-) True coq3
XM_043260941.1 mRNA upstream 1692 23676990 ~ 23736637 (-) True me1
XM_043260942.1 mRNA upstream 1692 23676990 ~ 23736620 (-) False me1
XM_043260773.1 mRNA upstream 77038 23752336 ~ 23787700 (-) False snap91a
XM_043260771.1 mRNA upstream 77038 23752336 ~ 23787699 (-) False snap91a
XM_043260775.1 mRNA upstream 77038 23752336 ~ 23787699 (-) False snap91a
XR_006252802.1 other downstream 60057 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 145516 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 735931 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1580844 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1701363 21964855 ~ 21968535 (-) True G115207
TU171232 other upstream 651409 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 1992521 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2704374 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 3131822 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 3135019 26810317 ~ 26812909 (-) False G116632

Expression Profile