RNA id: XR_006252750.1


Basic Information

Item Value
RNA id XR_006252750.1
length 4415
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122359981
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24044760 ~ 24057262 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCAAACACAATCACGTTCTTAAATGGAAATGTGGGGCTTTAAACAAATCTTACATCTCTCCTGTTCCAGTCGTCTAAAACTCCGCAATCAGCCACACGTTCGACTCCATCTAAAACCACAGCTTTTTTTAGAAGATTTTTTCGGCTTTTGCGAGGAAATGTGCCGTTACATGCGGAGAATTCGGGCGTCGAACCAAAACGCTTCTCTGTGGACTAATGGAGCTGAaagctgatgatgatgatgatgatgatgatagagAAAATATCATGCAAGCATAATTTTCCTTCTGTGAAAGCAGATGCAGAGGGGAAAAAGGTGATACACATCACATTACTTAACATAGCTTTATAGTTTTATGAACTTTTAGCTTAATAATTATAGTTGTTAGATAATATATTCACTttacgtttcttttttttattgggaATGGTTAGCAATAAAAGCAAGCACAAGtagactaaataaaaacaaatgaaaatgtaatttctacTTTTATACAGtgcgtttatttaaatataaaattgtacattaaataaatgaatgtaatattttaatatcattttataattaattattaggcgctcaaaaatatattttgcattataattagTAGGTTTCCGACGACACCTGTTTACTGCTTACAGAGTATTATTGTCAGAAAACCCACAGCTGTTTCATTTCCTCCTTTCCGTCAAGCTCAGCTTGGGAATGGCAGAATTTCTAAGAACCTTGTGTAAAGTACTTAATCATTATTCCgtcacttaaatatttaatgattgATTTGGCAAACCTTTGTGGGTTTCCTCATGTAAACTGTCTGTTGCACTGGAGTATTTTAAGAGCCGTCTCTCTTCCCTGGTGGCAGGAACAGTGAGGCTAAGCCAGCGCAAAGCCGCAGAGTTCCACATGTCACTGCACACTCAAGAGAGCCCTCACCAAACTTATTAATGAGTTGCTTCCTTTTAATTAGATAGTAATTCATGTTAATGCATGCCTAATGAACCCAAATCGTTCCCTTCGGTCATTCCGCGGAGTTCCACTGTGTTCCACTGTGTTTActcattctgtctgtttttcccgcttttgtgttttattaggcTCAAAGGGGCCTGAAAGGACCGAGCGACTTGCTTTAGAGACATCTGAGAAGTCCATTGAAAGAGGCAATAACGGGATCAAGGGGCGTTCGTGTATGAATTCAACCGTATGATATCAAGAAGGCTGCTTTAGCAACAGATGCTTTGAGATCACCATGATACGCTTTCACTGAACTTCTAGCCACAGGGTTACGTGcctcatgtgtgtgtttgtgcactgtGGAGACTAGGAGACAGTGATGGCAAATAGCAGAGTGACCGGACCGGCTTCAGCCCAAAAGGGGTCACGACCAGACTCCAAGTGCTCCTGTCTCGATGTCGTCCGTGGTCAAGCACTTGCCAGGACAGACTGAATTAAATTAGACTGCTTTTAATTGAGGATTGACCGGTCTGAGAGCAGCTGGCGCTTGGGTCAGTCAAGATAGCAAAGCCCTGAATCCCCCAGGCCCCAACTGCAATTTCAGCCCTGCAGGTCCTGGAATGGACTGGGAGGGAGAGAAGTCCGGAGCATGCTGGGAATGCATGGCTGATGATTAGCAATAAGAGTTTATAGGAAGGCTTAGATGAGATTTGGCTTGTTTGCTTGAGTGGAaagtgtaacacacacacacacacacacacgtgtgcgCTCTCAGAGCCTGTAGACTCAGCGTAAATCGGCTTAAGGTTTGCACCTCGCTGAAAATCTCCTCAATCGCCCGGTCGACACAATTAATCGCTTCATTAATTAACAATCGCTGTGCGATACACCACCCCGGCTGTGTCTTGGCAAGCGTGCAACTTACAAGCAAgcccttctttttcttcttacGTTCTCTTGCTTCACTCCTCCCACCCGCTTCGATACTCCTCTTTATCTTTTTCTTCTGTactccttttcttttctttctttaagcAGCATTGCAAAAGCCGACTCTGCTGTTTTAGCAGGAACAGACGCACTTTTTTTCTCGGCAAGCAGGTCAGAGCGCTCTGCTAACATTTGTTATCTATAATCCTGCAGGTCCCCGCGCAAAATGAGCGTAGTAAACTCTTGCAAAGCCCTAATCCCTCCGTTTCTTTTAGATgcgctttttctctctctcatgctcttttcttttccatCTTTGGGGTGGGAAAGCGTTTTTTTAAGAGGAGGCATCTCTGATTGTGACACTTATTTTTGAGCTTTTCTGAATTACTCAACTTCTTTTACTTAGGAACTCGTCAACCTTTTTTTTGGCAATTAAAAAGATTCTGATTTTTTAACACACTCTGCTGCCGAAGAATCATTTCAGGCCGCCACCAGCCGCCCATGCTTTTGTGACAGGCTTTGTTGATTTGCTTTTCAGACTCATGTGTGTGGTTCACAGaaatctctctctttattcATACTGTACGCATTTACGGTTCAACTGTCGGTGTCAGTTAATCTGGCTTTTGCGGTTGATTCATCTCAGTATCATACAAGGATATgtgcaaaaaaaggtttttctttcGCCATCACTCTCAATTATCTATGCGCTGATTTGATTTGAGTTCGATACTATGCAAATTATGTATATGAATGCTCTCGTACAGTTCTGCTGCATTTTGTCTTGGTCATGCACACCCACACATGTAGCGAGCACgtcgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtatggtGAGTAATAGCAGGGCTCGGTGGAAGGCTGTAGTGTTGACAGCATGGTAAACGATGCAGCCTGCCTACTGCAGCAGCTAGCCTGCTAATCACATACACCACATGATAATGAGAACAACCCCTGtcctccaacacacacacacacacacacacacacacacacacacacagtaaccaCTAACCACAGCAAACAGACACAaactccctctcacacacactgacccaTACTTCTACAGACAAATGGAAGACATAATGGTAGCCGGAGGCAGTGCACGGTGcatctttctatctctctctctcacactctcgaACCAAGCACATCTCTATCGCTTTACTGTccttacacacatacatacactgtTCTCTCTTGTACTAACAGCTTTCTGACAGAAGACTCGGACTTGCGTCACACATACACTGGGAGAGTGACATGAGATTTGATGTGGAATCATAGTGGCAATTAAGATGGGACTTTAGAGACTTGTAATTTAAAGTTTTTGGGTGTATAAGGTGATGTATTTTCTCTGAATATTGAAAAAGTTTGGGTCTCTTATGCACTTACCATGAGTAATAAAAttactcattttaaattaattaaattatttttgaatgattgAAGTAAATgaactattaatttaaaaacataattaaaatataatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaaagacATCTATTCTGCTCATGAAggctgattttatttgattaagaaataaaataaaaacaatataaagtaatactgggaaatgttattacaatttctaCCACTTTCTATTTGAACATGTCTAAAAAGCTGAAGTTAatgctggcttttttttttgcaaaatagcaacacacacaaacacacacatatatataggtCATTTCTATCTACACACAACATATCACATCAGTCATATATCAGATTTTGCTGCTAAGGGTATGAAGAGGActtgaaaaagaaaggaagcaTGTAAACCCTCAAACTCCCTCAAATACCCATGGGTGCAAGATTTTGAGTCACAGCTACTTTCTTGATGCAGCTGTGGGCATATGAGAgatttcagttaaatatttcctctttctccctcacaaactaaaaaaaaacacttttagctGAGTCCCTAAACAGTTCCTGCTCTGTTAGACCATCAGGACACTTTGCTGTTGCATGGGGGTTAGGAACAAGGAACTGTAACACAAACCTAAGCTACTGAATTTTAAGATGTTTGAGGACTCTGCCAGGAAGCGAAAAATAACCGATCAATTTGTTTGAGGTCACGTGCAGATTTACGCACATTACCTGTGATTAACACGGGTATAAATTAGGATATTGTTTCCTGGCAAATGTGCGCTCTAAGGAATGAAGATGTgcaaatgtgttcattttaagtGAGGTGACACTCACATTCACACTTCTTTGTATCTTGCAGGGCGTCATGTGCAGGATGTAGACTGGAACAGGTGGGGTGTCTGTAGGTCCTTTTCGTACCATATGCAATCAGGTAAGGCCATGGGGCatgatgtttattattattgctgttatcattgtttcatattttaaaacgtgCTTGATATGTGATGTAATTTTGAAGATGTCTCtaagacaataaaaaagtaaaacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171151 lncRNA downstream 1520 24045805 ~ 24047018 (-) False LOC122359981
TU171126 lncRNA downstream 226250 23820852 ~ 23822288 (-) True G115914
TU171127 lncRNA downstream 226713 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA downstream 227151 23820519 ~ 23821387 (-) False G115914
TU171123 lncRNA downstream 231438 23816900 ~ 23817100 (-) True G115911
TU171157 lncRNA upstream 20387 24077631 ~ 24077867 (-) True G115939
TU171175 lncRNA upstream 130693 24187937 ~ 24188594 (-) True G115954
TU171236 lncRNA upstream 307401 24364645 ~ 24368365 (-) False LOC122359997
TU171248 lncRNA upstream 356982 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA upstream 384083 24441327 ~ 24473365 (-) False serinc2l
XM_043260779.1 mRNA downstream 232749 23811951 ~ 23815789 (-) True pnrc2
XM_043260767.1 mRNA downstream 236863 23789106 ~ 23811675 (-) False dop1a
XM_043260768.1 mRNA downstream 236863 23789106 ~ 23811675 (-) False dop1a
XM_043260766.1 mRNA downstream 236863 23789106 ~ 23811675 (-) True dop1a
XM_043260777.1 mRNA downstream 260836 23758581 ~ 23787702 (-) False snap91a
XM_043260240.1 mRNA upstream 27243 24084487 ~ 24087339 (-) True utp11
XM_043260043.1 mRNA upstream 77639 24134883 ~ 24154422 (-) True rspo1
XM_043261532.1 mRNA upstream 139453 24196697 ~ 24198654 (-) True dnali1
XM_043260102.1 mRNA upstream 254245 24311489 ~ 24316132 (-) True rcc1
XM_043261588.1 mRNA upstream 260238 24317482 ~ 24339788 (-) True phactr4b
TU171098 other downstream 373240 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 438697 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 524156 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1114571 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1959484 22087649 ~ 22089054 (-) False eny2
TU171232 other upstream 269463 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 1610575 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2322428 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2749876 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2753073 26810317 ~ 26812909 (-) False G116632

Expression Profile