RNA id: TU171236


Basic Information

Item Value
RNA id TU171236
length 2288
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC122359997
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24364640 ~ 24369566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtcatatttacagtaaattacatatacatatatatacatatatatacaaattaggattttatttttacttgattaTTATAAGTTTGGCAATCGACATACCTTTTTGCCTATGTCTTCATTCTCAGGCTTGttgagatatatttttattttgattgttttacatttaaactcaCTTCAAACTCAGCTCCATGCAGTTCTAGAACTGTTTATGATTTTAAACATCTGTCTGACCGTATGTGAACACAGTCAGGGGCTCATATTCATTTTGTACAAATCTGACGCCTCAGTGTCGACAATTAAAGCCAAAATTGACAACTCAGCACAGATGTGTGTGAATGACTGTGAACTTTACAGCTGCCCACTATTAGCCAAGATCAAACATCTGAGACCTTGTTCGTCATTACATAAGATAGCGGAGAGAAGTGGGAATAAAGTGAGCTGATAAATCAAAATCATAAAAGCATAACATATGGTGTACGGAGCTCATCATTTCTCTATAAGACTAAGCCATATAGTCTCTGCTGGAGCTTTTTGGCCCAGAATGATTACGGAAAATTTTATGGACCGCAATATATCTCTTGTCTGCAGGCTGGGGGTTGCCTCTAGTGCCCCAGACTGACCTGAGTGACCCGTCTGCAACCCACAGGGTCAGGAGCAAACGCTGCTCCTGCAACAACCAGCTGGATTCAGAATGCCATTATTTCTGCCATCTGGACATCATCTGGGTGAACACGCCAAGTAAGACCACAGTGTATGGACTGGGCAGTCCGTTGGCTCGCCGGCGCAGGTCTACGGGCCGCTGCTTATGTGCTAGTCCTGCAGATCAAACATGCAATGCATTCTGTCACTACAGCTCTGAAAATCCTGCCATCATGCTGATTCACCCATCTGAACCTGTGACTGGAAGACAGGAGCAAGCCAAATCAGAACTGATTGTCCTAGACAACTCTGAAAATGCCAGTCCAGGAGTTCTGGTTGTAGGGAAGCCTTCCTCCCTTGGGGCTCGATCAGACATCATAACCTTCCTCAAGAACCTGGTTAGGGCTAGAGCCAGAGCCATGGGAAAGGCATCTAAAGCCAGTGAACCTGGCTACAGATGAAGTCCTTACCCGGAAGAGAGGTGGGAGTATGAGCACTTGAACAAAAAATGACCCTTGTGAAACCAGGGGCAGCAGAACATGCATACGCTGTGATCTGGAAGCAGCATTCCTCAAGGACCGTCCTGTGGAAATGGAGCCTTTGTCACACATTTAAGACAGAATAGGAGAGATGAAGGCTTGTGAGAGCTTAAGGAGATATTTGTGAGTTGAAGGCAAGTCAGATTTGTCCAAAGGGACACAGCATAACAGAGGGTTAGGTGTTAGCGACAGTCCTGTATGCAAACAGGACCTTAGTTAAGTGGCTATAAGCTACATAACAGTATCATAGCTAGTCAGAAAAGCACCAAGTTTGAATGGTTAGAAATGAAAGAGTGCTAATGAATGTTTGTTGGATGGTAAGAAACTGCAgtaattctattatttattggCACCATTGACGctgttttaacaaaacagagaaaaagcaaaaatacatttcaaaaatgactaattatGTTTTAGAAGAGACTACAAATTACCCATATTTGCatagttaattaattatttaaaacattagttCCAAATTGAGAATCATGCCAGAAAGATTGGCATCTTTGACTGGAACAATTGGAGCCACAAACTGCAACAATCCGGATTCATTGTTACCCAGATGCTTTCAAATTTGACGTAACAATAGGACGTTTCTGAAAATATAGCATAAGGATGACTACTATGCCCTTCATTTTCATATCAATCCAGCTTTGCCTAGCATTGTGTGTAATCATAAGTGATGCAGACAGTTGTGTTGTTGCAATCTGTTGTTATGACCTTATGACAGACAATAGATTTAATCTTGCCAAAAAAAGCTGGAGTGCTTTCCAATTTATTAAATAGCACAGGAACATTTTAGAGCACTAACAGTGTATCGCACACAATAAGTATgcactttaaaattatttttgtatatgtatgtagatatatatatatacatacatacatacacacatatatattttcttgtgattattatatttaatcattaataattctGTAGAGAAAGTAATGTAATGTATCAGCAATATGATTTTACAACAAagtttcatataatttaaaatgaaatgtatgtattccataaatgtttttgcatactCTGAACATGTTTCTTGATATCTATTGTTATTAACAATAATCCCAATAAATTCACCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171175 lncRNA downstream 176051 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 286778 24077631 ~ 24077867 (-) True G115939
TU171150 lncRNA downstream 307383 24049753 ~ 24057262 (-) False LOC122359981
XR_006252751.1 lncRNA downstream 307401 24044760 ~ 24057244 (-) True LOC122359981
TU171248 lncRNA upstream 45861 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA upstream 72962 24441327 ~ 24473365 (-) False serinc2l
TU171515 lncRNA upstream 453136 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 465171 24833536 ~ 24833958 (-) True G116179
TU171502 lncRNA upstream 466734 24835099 ~ 24835364 (-) True G116164
XM_043261588.1 mRNA downstream 24857 24317482 ~ 24339788 (-) True phactr4b
XM_043260102.1 mRNA downstream 48513 24311489 ~ 24316132 (-) True rcc1
XM_043261532.1 mRNA downstream 165991 24196697 ~ 24198654 (-) True dnali1
XM_043260043.1 mRNA downstream 210223 24134883 ~ 24154422 (-) True rspo1
XM_043260240.1 mRNA downstream 277306 24084487 ~ 24087339 (-) True utp11
XM_043260526.1 mRNA upstream 3738 24372103 ~ 24430886 (-) False LOC122360159
XM_043260528.1 mRNA upstream 3738 24372103 ~ 24430886 (-) False LOC122360159
XM_043260527.1 mRNA upstream 3738 24372103 ~ 24394405 (-) False LOC122360159
XM_043260530.1 mRNA upstream 3738 24372103 ~ 24394405 (-) False LOC122360159
XM_043260531.1 mRNA upstream 5670 24374035 ~ 24430885 (-) True LOC122360159
TU171232 other downstream 36672 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 689347 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 754804 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 840263 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1430678 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 1299454 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2011307 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2438755 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2441952 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2441952 26810317 ~ 26812909 (-) False G116632

Expression Profile