RNA id: XM_043260265.1


Basic Information

Item Value
RNA id XM_043260265.1
length 2524
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122359997
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24364640 ~ 24369566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttatttcattttcgtTATTAAGATGGttcataaatgttacatttttataaaagcaccACAGCAGCTCTTCAATAATATCTAAAGGAAATTAACTGGTTTATGCTGGCACTGTATGTAGCAacacaaaataatcaaatcaattttgaattacattttcatatctCTGACTAATTTGTATAATCAGAAACAAATAGTGGCCAGAGGTCATAGGAAGCTTCTTTCCCCACTGTCCACCCACTCACGGGCCTTAGAGACAGGAGCTGCCCTCCAGAATGTTCCCTCTTTCCACGGGACACTGTTTCTCCCTGCAGAGTGCAACCGAATTCATGcaaagcagcaaatcagctgaTATCCACTTGTGACTCTTCTTTTCCTGCTGGCCCTCCAACCCATTTCCCACCCCAAGACCCATTAGTCAGTTTAAATCCACATTGTTAAGTtccaggaaagaaaaaaaaaagtttctctttttttccattcttgATCATCATTGTTCGGGAGCTTGCATGGGTCTcctttacaaatacaaacaggTTTGTTGAGGGGGCAGCAGAGATTCTTGGAATGTTGCGAAGACAAACTGGAGTTGTGTAACTATCACACAGCCAACGTAGTGGGGGGAGTGGTGCAAGGCACGAGCTATAAGTGTGGCCAAACAGGACGGTTCAACATTAGACAAGCACCTGCAGCTGAGTGAGATCTATTGGGATTGCTTAGTGAAcatctgcatttatttctacTACAACATACATGCAAAATGGAATCAAGAACTGCTCTGATCTTCACTTTTACCTTGTGCACGACTCTTCTTGAAGGCTGGGGGTTGCCTCTAGTGCCCCAGACTGACCTGAGTGACCCGTCTGCAACCCACAGGGTCAGGAGCAAACGCTGCTCCTGCAACAACCAGCTGGATTCAGAATGCCATTATTTCTGCCATCTGGACATCATCTGGGTGAACACGCCAAGTAAGACCACAGTGTATGGACTGGGCAGTCCGTTGGCTCGCCGGCGCAGGTCTACGGGCCGCTGCTTATGTGCTAGTCCTGCAGATCAAACATGCAATGCATTCTGTCACTACAGCTCTGAAAATCCTGCCATCATGCTGATTCACCCATCTGAACCTGTGACTGGAAGACAGGAGCAAGCCAAATCAGAACTGATTGTCCTAGACAACTCTGAAAATGCCAGTCCAGGAGTTCTGGTTGTAGGGAAGCCTTCCTCCCTTGGGGCTCGATCAGACATCATAACCTTCCTCAAGAACCTGGTTAGGGCTAGAGCCAGAGCCATGGGAAAGGCATCTAAAGCCAGTGAACCTGGCTACAGATGAAGTCCTTACCCGGAAGAGAGGTGGGAGTATGAGCACTTGAACAAAAAATGACCCTTGTGAAACCAGGGGCAGCAGAACATGCATACGCTGTGATCTGGAAGCAGCATTCCTCAAGGACCGTCCTGTGGAAATGGAGCCTTTGTCACACATTTAAGACAGAATAGGAGAGATGAAGGCTTGTGAGAGCTTAAGGAGATATTTGTGAGTTGAAGGCAAGTCAGATTTGTCCAAAGGGACACAGCATAACAGAGGGTTAGGTGTTAGCGACAGTCCTGTATGCAAACAGGACCTTAGTTAAGTGGCTATAAGCTACATAACAGTATCATAGCTAGTCAGAAAAGCACCAAGTTTGAATGGTTAGAAATGAAAGAGTGCTAATGAATGTTTGTTGGATGGTAAGAAACTGCAgtaattctattatttattggCACCATTGACGctgttttaacaaaacagagaaaaagcaaaaatacatttcaaaaatgactaattatGTTTTAGAAGAGACTACAAATTACCCATATTTGCatagttaattaattatttaaaacattagttCCAAATTGAGAATCATGCCAGAAAGATTGGCATCTTTGACTGGAACAATTGGAGCCACAAACTGCAACAATCCGGATTCATTGTTACCCAGATGCTTTCAAATTTGACGTAACAATAGGACGTTTCTGAAAATATAGCATAAGGATGACTACTATGCCCTTCATTTTCATATCAATCCAGCTTTGCCTAGCATTGTGTGTAATCATAAGTGATGCAGACAGTTGTGTTGTTGCAATCTGTTGTTATGACCTTATGACAGACAATAGATTTAATCTTGCCAAAAAAAGCTGGAGTGCTTTCCAATTTATTAAATAGCACAGGAACATTTTAGAGCACTAACAGTGTATCGCACACAATAAGTATgcactttaaaattatttttgtatatgtatgtagatatatatatatacatacatacatacacacatatatattttcttgtgattattatatttaatcattaataattctGTAGAGAAAGTAATGTAATGTATCAGCAATATGATTTTACAACAAagtttcatataatttaaaatgaaatgtatgtattccataaatgtttttgcatactCTGAACATGTTTCTTGATATCTATTGTTATTAACAATAATCCCAATAAATTCACCTCAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171175 lncRNA downstream 176046 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 286773 24077631 ~ 24077867 (-) True G115939
TU171150 lncRNA downstream 307378 24049753 ~ 24057262 (-) False LOC122359981
XR_006252750.1 lncRNA downstream 307396 24048538 ~ 24057244 (-) False LOC122359981
TU171151 lncRNA downstream 317622 24045805 ~ 24047018 (-) False LOC122359981
TU171248 lncRNA upstream 44660 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA upstream 71761 24441327 ~ 24473365 (-) False serinc2l
TU171515 lncRNA upstream 451935 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 463970 24833536 ~ 24833958 (-) True G116179
TU171502 lncRNA upstream 465533 24835099 ~ 24835364 (-) True G116164
XM_043261588.1 mRNA downstream 24852 24317482 ~ 24339788 (-) True phactr4b
XM_043260102.1 mRNA downstream 48508 24311489 ~ 24316132 (-) True rcc1
XM_043261532.1 mRNA downstream 165986 24196697 ~ 24198654 (-) True dnali1
XM_043260043.1 mRNA downstream 210218 24134883 ~ 24154422 (-) True rspo1
XM_043260240.1 mRNA downstream 277301 24084487 ~ 24087339 (-) True utp11
XM_043260526.1 mRNA upstream 2537 24372103 ~ 24430886 (-) False LOC122360159
XM_043260528.1 mRNA upstream 2537 24372103 ~ 24430886 (-) False LOC122360159
XM_043260527.1 mRNA upstream 2537 24372103 ~ 24394405 (-) False LOC122360159
XM_043260530.1 mRNA upstream 2537 24372103 ~ 24394405 (-) False LOC122360159
XM_043260531.1 mRNA upstream 4469 24374035 ~ 24430885 (-) True LOC122360159
TU171232 other downstream 36667 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 689342 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 754799 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 840258 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1430673 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 1298253 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2010106 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2437554 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2440751 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2440751 26810317 ~ 26812909 (-) False G116632

Expression Profile