RNA id: TU171247


Basic Information

Item Value
RNA id TU171247
length 1217
lncRNA type sense_over
GC content 0.35
exon number 2
gene id serinc2l
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24414226 ~ 24473365 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatttcatttttattttattcgattaaaaaaacatgtattcaCACAGCATATTACTGGACATGATCATTTTTTGGATGCATGTAATTGCTTCTACTAAGGGAGTTCAGAATTTGGAAATAAGGTATAACTCATTTTAGAAAAGATTGATGCACTATTTTGAACACATAATAATGTGACAGCATGTGGACAACAAGCCATTCATCACTGCAAAGCTGTTTACAACTGCCATAAATTTTCATGCACTAACTCTGTTTTGGCAACAAAGGATAAATCAATTATGGttgtcaacatttttttttttttttttttttgaaggcattgcaagaaaaaaaatgttcaaaaaagcCTTTTCTGATACCAGCTAGACAAACTCAAAACCACTAGATGCCAGTATAGTTCAAATACAGTTTCAAATGCAACCGATTTTTTTAGTTCTCAAACCTTTGTAAGTACTTATTGGaatgcactgatttttttttttttttttttttttttttttttttttttaacactgatagcATTTTAACTTCAGGGTTCAATGCATTGTACGATAGACActacaattaaacaaatatacaatttCACTCCgatttagcacttttttttctctcaagcAATGGGGAGAGAGGGCCTTGGGCAGCCCACGTGCGCTGGGGGGGCTTGAACAGGGGGCTGTTTTCAGTCCACGTCCTCTGTAGAGCCCCTGGAACTTGTGCATCCAGCAGATAAGCCCAATCAGACACACCCTTCCCTTGTACAGCTTTCTACACCACACTCGACCGGGGTCTACCGCACTGCCATAAACAACAGACTGTGATccaaatgaatatattatggTGCTGTCGATCCATCAGAGGCACATGCTAGCATACCTAGTTTGTTGTTTGGTGTGGCAATAGATAATTTAATGTGAACTAATGCGTTTAGATGGCACTTACGTATGAATGAACGGTTCGGGGCTGGTTAATGTGGTAAAGGTGATTATATTTAATctgtaaatgtttctgaaaatgaatgttaatcCACCTGTGACACTTTGTATACttttagtgggtttttgttattACTTTGATTAATTTGCAAGCACATGCTGGAGTAATATTACATAAGAAAATGTTCTAAAAGTGACCATATGTTTAGCTTACATTTGTGTAAAATTGCTAAAAAGCTGTTATGAAAGCAAAATATGAAGTTCATTTCAAAAGGGGAAAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171236 lncRNA downstream 72962 24364645 ~ 24368365 (-) False LOC122359997
TU171175 lncRNA downstream 252733 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 363460 24077631 ~ 24077867 (-) True G115939
TU171150 lncRNA downstream 384065 24049753 ~ 24057262 (-) False LOC122359981
XR_006252750.1 lncRNA downstream 384083 24048538 ~ 24057244 (-) False LOC122359981
TU171515 lncRNA upstream 348136 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 360171 24833536 ~ 24833958 (-) True G116179
TU171502 lncRNA upstream 361734 24835099 ~ 24835364 (-) True G116164
TU171572 lncRNA upstream 605902 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 704087 25177452 ~ 25178607 (-) True G116242
XM_043260526.1 mRNA downstream 10441 24372103 ~ 24430886 (-) False LOC122360159
XM_043260528.1 mRNA downstream 10441 24372103 ~ 24430886 (-) False LOC122360159
XM_043260531.1 mRNA downstream 10442 24374035 ~ 24430885 (-) True LOC122360159
XM_043260527.1 mRNA downstream 46922 24372103 ~ 24394405 (-) False LOC122360159
XM_043260530.1 mRNA downstream 46922 24372103 ~ 24394405 (-) False LOC122360159
XM_043260835.1 mRNA upstream 153229 24626594 ~ 24808670 (-) False ptprub
XM_043260834.1 mRNA upstream 153229 24626594 ~ 24808670 (-) False ptprub
XM_043260832.1 mRNA upstream 153229 24626594 ~ 24808670 (-) False ptprub
XM_043260831.1 mRNA upstream 153229 24626594 ~ 24808670 (-) False ptprub
XM_043260833.1 mRNA upstream 153229 24626594 ~ 24808670 (-) False ptprub
TU171232 other downstream 113354 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 766029 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 831486 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 916945 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1507360 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 1194454 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1906307 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2333755 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2336952 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2336952 26810317 ~ 26812909 (-) False G116632

Expression Profile