RNA id: XM_043261016.1


Basic Information

Item Value
RNA id XM_043261016.1
length 2727
RNA type mRNA
GC content 0.42
exon number 10
gene id serinc2l
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24414226 ~ 24473365 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTTACAGTCGTTACCTTCAAATACAGGAATAAACTGACAGAACGAGAAATAGCTCGTACTGTAATTGACTGCTAGTTCGTCTTCTTAAAGTTTGGAGCcgtttgtttattaatacagaATGGGAGCCTGTATGGCGTTGTGTTCCCTTGCGAGCTGTGCCTCGTGTTTGTGTGGCTCCGCTCCATGTCTCCTCTGTGGCTGTTGTCCTTCTTCCAATAACTCCACCGTCACCCGGCTGgtcttctctttcttcctcctcCTGGGGACACTGGTGTCTGTAATCATGATCTTGCCTGGCATGGAGACGCAGCTCCGCAAGATTCCTGGCTTTTGTCAAGGCGGAACCACAATACCAGGAATCGAGAACCATGTTAACTGCGACGTGATTGTAGGCTACAAATCGGTGTACCGCATGTGCTTTGCTATGGCATGCttctttttcctgttttcaGCAATTATGATTCGCGTAAAGAGCAGCAAAGACCCTCGCGCCGCTGTTCAGAATGGGTTCTGGTTTTTCAAGTTTCTGATACTTGTTGGCATCACCGTTGGAGCCTTTTTCATCCCGGATGGAACATTTCATGATGTTTGGTTCTACTTTGGTATCGTGGGCTCCTTCATGTTCATCCTGATCCAGCTCATCCTCTTGATCGACTTTGCCCACTCCTGGAATGAGGTGTGGGTGAGAAATGCTGAGGAAGGCAACGGCAAGTGTTGGTTCTCAGGTCTGTTGTTCTTCACCGTCCTTCATTATGCCCTGGCCTTTGCAGCAGTCGTGCTGTTTTATCTCTACTACACCAAACCCGACAACTGCGCCGAACACAAGTTCTTCATCAGCTTCAACCTTATTCTCTGCATCATCATATCTGTGGTTTCTATTCTGCCAAAAGTGCAGGACGCTTCACCTCAGTCTGGTCTGCTTCAGTCTTCTATTATTACTCTGTACACTATGTACGTCACCTGGTCAGCCATGACCAACAATCCTAATCGTGAATGTAATCCTAGTTTGCTCAGCCTGGTGTCCAATGTCAGCACAACTGAGGCCATGCCCACAAGCTCACCTGGGATGGTGCAGTGGTGGGATGCCCAAGGCATTGTGGGATTGGTTATCTTCCTCTTTTGCACCTTTTATGCCAGTATCCGTTCATCCAGTAATGCTCAGGTGAACAGGCTGATGCAGACGGAGGAAGGGAAGGGCACTATGGGAGGGGAGGAGGTTGGCGAAGACGGACTGAGGCGTGTCGTTGATAACGAAGAGGATGGCGTCACATACAACTATTCCTTTTTCCACTTCCACCTTTTACTAGCCTCTCTCTACATTATGATGACACTCACTAACTGGTACAAGCCTGATACAACCACTCAGGCCATGCAGAGCACAATTCCTGCAGTGTGGGTGAAGATCAGCTCCAGCTGGCTGGGTCTGGGCCTCTACCTGTGGACGCTTGTGGCTCCTGTCATTTTCCCCAGTCGAGACTTCAACTGAGCTCGAGTGGGTGAGACTCTCACCTGTTCAAACTGGCCGTGTTTGTGCTATGGTATAAATATTGCAATCTACAAATACCATTAAATAGCCAACactaaatgcaatgcaaatctGAAACCGACATTTGGTGACTAGTCTCGTAGGCCTAGTAGGTACTTAcacgtatttaaaaaaaaatgcatgggcAACAACAAAAGTATGATGCCGTGacaagtatttaaaaattacgCTAAAGTATATTAATTGTTCAGTAAATTGACTCATGACGTGAGGATTACTGCTGTGCAGAAAGTCGCCATTCATTATTAGCACACCTGAAGCACACTTTTGTGAGTAACATATCTTTGCAAAAATGCCAGTTTGAATAACAAATTCCGTTTTGCTTTGATTCCTCCATCCTTTTATCTCATATTCACGTCCTTAAGAGCTAAAATGCTTGGACAATTAAGGAAATGAGAAGCACCTTTTTGCTTAACGATTGATTCGATGCTGTCTCATTTATTACACTACATTTTAAATCGTTGGCGGCTGTGAGATTTGAAAGTAATCTCTTATGCctaccaaagctgcatttatttggtcaaaaatacagtaaaaccgtattattgtgtaaaattacaataaaaaaactgcttattatacatttaaaatataatttttagttACAGCAAAGCTAATTTTCATAATCCTTTACTCCAGTTTTTGGTGTCACATGAATCataattcagaaataattctaatatgctaattttgtgctcaagaaatatttattaatattagcaaTAGTGAAGTTTTGCTCgatattttggaaaaaacattaaatattatttttatgagtcTTTCTGCTTATTTTGCTTACTTTAATGCTGGTGTTATTCTGTCAAAAGAGTCACTATATCTCCACACATGAAGGATAAAAGAATGAAATAGGTCGCTTCTAGCGCGTTTGTCGATATCTTGAATTATTCACCATCACATGGTACTTGAGGGttattttgttgtcatttcaAACTCAGTATGGCTGTTAAGTATGTTTTCTAAAGTCAATATTACTAGTTTATCTTGTTTAACAGATGCAAGCTACTCAAACCTAAGGCCACGCATATCCAgtgcaacaaaataaacactatcCTACAGACCATCATCACAGTGGTCCTAGCCACGAATTCAAATATGCATTATACTGCTGCTAGAAACCTACTCTACCtgaagaaaaaactttttttttttttttttttt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K24176 SERINC2; serine incorporator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171236 lncRNA downstream 73671 24364645 ~ 24368365 (-) False LOC122359997
TU171175 lncRNA downstream 253442 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 364169 24077631 ~ 24077867 (-) True G115939
TU171150 lncRNA downstream 384774 24049753 ~ 24057262 (-) False LOC122359981
XR_006252750.1 lncRNA downstream 384792 24048538 ~ 24057244 (-) False LOC122359981
TU171515 lncRNA upstream 370417 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 382452 24833536 ~ 24833958 (-) True G116179
TU171502 lncRNA upstream 384015 24835099 ~ 24835364 (-) True G116164
TU171572 lncRNA upstream 628183 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 726368 25177452 ~ 25178607 (-) True G116242
XM_043260526.1 mRNA downstream 11150 24372103 ~ 24430886 (-) False LOC122360159
XM_043260528.1 mRNA downstream 11150 24372103 ~ 24430886 (-) False LOC122360159
XM_043260531.1 mRNA downstream 11151 24374035 ~ 24430885 (-) True LOC122360159
XM_043260527.1 mRNA downstream 47631 24372103 ~ 24394405 (-) False LOC122360159
XM_043260530.1 mRNA downstream 47631 24372103 ~ 24394405 (-) False LOC122360159
XM_043260835.1 mRNA upstream 175510 24626594 ~ 24808670 (-) False ptprub
XM_043260834.1 mRNA upstream 175510 24626594 ~ 24808670 (-) False ptprub
XM_043260832.1 mRNA upstream 175510 24626594 ~ 24808670 (-) False ptprub
XM_043260831.1 mRNA upstream 175510 24626594 ~ 24808670 (-) False ptprub
XM_043260833.1 mRNA upstream 175510 24626594 ~ 24808670 (-) False ptprub
TU171232 other downstream 114063 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 766738 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 832195 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 917654 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1508069 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 1216735 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1928588 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2356036 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2359233 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2359233 26810317 ~ 26812909 (-) False G116632

Expression Profile