RNA id: TU171520


Basic Information

Item Value
RNA id TU171520
length 423
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G116179
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24833536 ~ 24833958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTGACCAGCTGTGTCCCAGAACtgcagtttgaccctcaccCCAGGTTCCACCTCTAGGAAGTGCACATAGAAGTCCACTCCGACTGTTTGGTTGATGCACTCCAGAAACAGATCCTCAGTGTAGCGCTTCAGCATGGATGATTTACCCACCGTGGAGTCTCCAAGCATGATGACTCGAAACTGGTACTGCCACAAAGTGAGATCCATGACTTGAACCAGATGAAAGCAGCGAATGAAAAGGCTAGTGTTGATCAAAGACAGCCACTCCACCAGGATCCCCAGAGAACCTCTTACCTTAGAGGTCTTGAAGTTATCATTGTAAACATAGGTAAAAATAAACTCATAGTTCCTCGGGTTCTCCTGTGTTTTCCTGCATAGAACAGAGTCTGTTTGATCGTCGTAGGAGTGGGAGCTTCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171515 lncRNA downstream 10126 24821501 ~ 24823410 (-) True G116174
TU171248 lncRNA downstream 360171 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA downstream 360171 24441327 ~ 24473365 (-) False serinc2l
TU171236 lncRNA downstream 465171 24364645 ~ 24368365 (-) False LOC122359997
TU171175 lncRNA downstream 644942 24187937 ~ 24188594 (-) True G115954
TU171502 lncRNA upstream 1141 24835099 ~ 24835364 (-) True G116164
TU171572 lncRNA upstream 245309 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 343494 25177452 ~ 25178607 (-) True G116242
TU171609 lncRNA upstream 377435 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA upstream 377435 25211393 ~ 25557473 (-) False G116237
XM_043260828.1 mRNA downstream 24866 24626594 ~ 24808670 (-) False ptprub
XM_043261009.1 mRNA upstream 2128 24836086 ~ 24839787 (-) True taf12
XM_043261006.1 mRNA upstream 5971 24839929 ~ 24846153 (-) True ctps1b
XM_043260492.1 mRNA upstream 58888 24892846 ~ 24906521 (-) False LOC122360137
XM_043260493.1 mRNA upstream 58888 24892846 ~ 24906512 (-) False LOC122360137
XM_043260491.1 mRNA upstream 58888 24892846 ~ 24905755 (-) False LOC122360137
TU171232 other downstream 505563 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1158238 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1223695 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1309154 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1899569 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 833861 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1545714 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1973162 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1976359 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1976359 26810317 ~ 26812909 (-) False G116632

Expression Profile