RNA id: TU171609


Basic Information

Item Value
RNA id TU171609
length 2391
lncRNA type read_through
GC content 0.38
exon number 2
gene id G116237
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25211393 ~ 25558018 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTATACAATTCACCCCCTTTATTGGAAATATACTAGTACCtggacattaaaaatgtatcagtcCCTCAGTGTTAATGCATAACGCCGCTGAATCTGTTTGGTTTATTGAACGTCTGCCAGTTAAGTTTACTAGCTACCTGTGGTACTTCAGGAGCGTTATATGTCCACTGTAATCCatgattaaatcattttgaataCGACAGGCAGCcacaattttataataataataataaaaaagcaactCAAAATTGTGCAATTCAATAGGTtcttagaaataaaaacattgagcATTTTCAGAGAAGGTACAAGACAGACCACTGACTAAATGTCAAGTTTGTTTGTTAATAACACTACGTACATTAAAAAGACCACCATTTAAACATGATTCTCCGTTAAAAGAAACTTCAAACTGGTAGTAGGATTTATGAGAGGCTGTACAGTGTGCAAAATACTGTCCGTCACGGCAGGCACACCTAAATGATGCAGACATGCCCACAAAAACGGTGAAAGATCATGTTTTGAAGCAAAAGCTCTCACCAAGTCTTTTGTCTGACAGCAGGTATCATTTAAATCTGCCCACAAACACACGCCTTTAGTCTTCAGAGTACATGTGTCAACACAAAACTGCACTGCATCACCGACATAATCAGGCGCTTCCAGTTTGCTCATGACTTCCAGTaagattacataaaaaatagcAGAGAAAGATTCCTGGACATGTctgaaaagtgattttttttttgtttgttttttaaattgataattACCAGGCCCACATAGGAATTGTGCACGACTCAAATGATCACACTTTTACACATGCAAGCTTCTCCGccatgggataaaaaaaaaaataaaaggtaacaGCAAATTTTGCtcacatatgtttttttttgcctatgCAAAAACAATTCAGACGACTCTGAAAAGTCAGAACTGTCAAATATCAACCCGTAATTACGAGACATAAATTTGCAGTTCAGAGGGAAACGAAGCTAGAATTGTGAAAAGGAAGAAAAGTCAGAATGCAAAGAAACTACTGCGAATACAGTCggcaacatttgaagtggatcaaaacctaaaaccaaaaagcGTTCTTGTTTTATGACAactttttgatccacttcagacGTTGACTGTATGAACTTGGAATTGCAACAAAGAGTCAAAATTCTAAATGCTTTTTTCAGTAATGCGAGTCTAACTCAGTTgtgagaaaagtcagaattatgagaccatctcagatttattttttcagatcttgaaatttttttttgtgggctGAAAGAAGCTTGCATGCACCTCCccatacgtttttttaaataaatacttttgcacatttttttttaatatgcacagCTACCAATGGAGTTCAGTAGATTTTACCCCAGAAAGGAGTCCATCTGGGCCTGGCAATAAGTGTATAAGCATAACACAGAAATGACAATACAGtcctaattaataataatcatcattcaTACAGCAGGCTGAACATGTTTTACCAACTGTGTTCCTTGATTTGTTCTTTATCCCGAAAGACAATATCGATTCGCCAAGCCATTTGTAAGATCCCTTCTGCCAAAGAGCTGGATGACTTTGAGTCATGCTCCTGAAGGCCcaatattttcaatatcatCATGGCCATACTGCAATATGTGGTGTACTAAGGACACAGCGGGTGCATTGAGGAATGCCTAACCAGAATATGAAGCTACTGCATCCAAACTACAACCAGAAACcaacttcttgaactctttctCCGATTCAAATTTGATTCATAAACAGGCCTACACGAAATCTGCATGCAGATTTCCACAGAACTGTAATGCATTCATGAGGTTTATTAGTTTGCTAAATTTGATTATGCTTACAGTTACCACTAAGGATAGCTTTGTTTAACACATTGTTTTAATCTGCAGATTGCGCCTGGGCCTGGTTATAAGGTTATAATCAGTTCCACATACTAAActcatacaaacacactcaatatttcactctctctctctctctctctctctctctctctctcacgctttCATCCGGGTTTGTTCTCCTGCtgaattaagttaaaatgtgtatttagcaTTTGTAGTGATACATGCATCCAGTAGACtgctgatttacatttttttcttaaaaataaaaaaaaaaaaaaaaaaaagtattagaaACACAGCTATACAGAGTCTTTAGCTAATCCAAGGAGCGAGGTTTGGAAGGAGGAGCCCCATGTCCAGATGTGATGCGGTTGGTTAGGAGGTGAGGACCATCGCTGTTTAGTTGCTACAGCAGGGACCTTTCGCAGGCTGTGCCGTTTCTGTTAGATCCACACCTCTGTTGCGTCCTGTGTTGGCACCTGCAGGCTGGGGCTCATTCTTGGGTAGTTTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171618 lncRNA downstream 32786 25177452 ~ 25178607 (-) True G116242
TU171572 lncRNA downstream 128797 25079267 ~ 25082596 (-) True G116212
TU171502 lncRNA downstream 376029 24835099 ~ 24835364 (-) True G116164
TU171520 lncRNA downstream 377435 24833536 ~ 24833958 (-) True G116179
TU171515 lncRNA downstream 387983 24821501 ~ 24823410 (-) True G116174
XR_006252863.1 lncRNA upstream 106701 25664719 ~ 25702534 (-) False LOC122361130
XR_006252864.1 lncRNA upstream 109064 25667082 ~ 25702534 (-) True LOC122361130
TU171646 lncRNA upstream 109368 25667386 ~ 25667668 (-) False LOC122361130
XR_006252865.1 lncRNA upstream 110342 25668360 ~ 25709709 (-) False LOC122361130
XR_006252862.1 lncRNA upstream 110342 25668360 ~ 25709709 (-) False LOC122361130
XM_043261711.1 mRNA downstream 5185 25200951 ~ 25206208 (-) True LOC122360868
XM_043260025.1 mRNA downstream 10493 25194401 ~ 25200900 (-) True pnp4b
XM_043260388.1 mRNA downstream 20644 25179830 ~ 25190749 (-) True calb1
XM_043260387.1 mRNA downstream 20644 25180167 ~ 25190749 (-) False calb1
XM_043260119.1 mRNA downstream 38932 25161763 ~ 25172461 (-) False pik3r4
XM_043260186.1 mRNA upstream 10513 25568531 ~ 25627099 (-) False znf385d
XM_043260187.1 mRNA upstream 10513 25568531 ~ 25627098 (-) False znf385d
XM_043260185.1 mRNA upstream 10513 25568531 ~ 25627097 (-) True znf385d
XM_043262091.1 mRNA upstream 154893 25712911 ~ 25728665 (-) False nek10
XM_043262090.1 mRNA upstream 154893 25712911 ~ 25728665 (-) True nek10
TU171232 other downstream 883420 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1536095 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1601552 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1687011 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 2277426 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 109801 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 821654 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1249102 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1252299 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1252299 26810317 ~ 26812909 (-) False G116632

Expression Profile