RNA id: XR_006252862.1


Basic Information

Item Value
RNA id XR_006252862.1
length 2329
lncRNA type inter_gene
GC content 0.42
exon number 7
gene id LOC122361130
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25664719 ~ 25710686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGGGATGAAGCTCTTGGAAAACTCCTCCCAGATTTCGTGACCGGGCTTGCAGGGGTCCACGAAGGGGGAAACGCTCATGGGACACACCTGAGAGAAGACCAGCAGAGTCCGATTACACCAGATCACCGATTCAAAAGAACACCGGGACACGACGTTCTGTGCCGTACGAACCCAAGAAAAGTGAAGGGAAGGTGAGGTTAAGTGCGACAGACGAGCTGCTACATTTAGCCGTTTGCTTCAGTAGGTCTATTGCATGCCTTTCAACCTGTAATCTATGAGTTATTAACCAGATCTAGATCTTCATCTCAGATAAAGGTTGACCACGTGATCCACATAAACCCATCTCAAACCGCAATCGAGTATGCTTTACACACACCCGTAGATTTCTCTGAGCACAGGCTGTGTTGTATCTTCAGAGCTTGTTTTTTCAGGACATCCAGGCAGATCATTGCCTCGCCGTGGAAAGACATCGAAATGCTCCCATCAGATATGATCACAAGTCATCTGGTGACATCTAGTGGACAAACCAGATGTCTGAGGTCGTCCTCACGTGAAAACAGgGAATCTAATCAGTTTCCTCAGGCAGAAATTCACAGGATAACAGATGCAGACACCTAAACGGGATGTTTTATCTTTGACCCACATCTATCctgccatccatccatcacaaGGTGCCTCTTCTGGAGCGGCAAGAGGAGCAGTTTCGCCGGTAATGCTGCACACAAAGCAAGTCAGataaaaatgagaccaatcggACGAGTCACCCACATTACAGTCACACAAAGGAGGGGTTGGTCAAACTAATCATTGAGCGAGTCATGTGAGCACGTAAAGcgaaaaacattttgtcagcctgttgttggtcactcccaaaaccaaaacgcGAACCAATGGTTATCAATAATAGTAGCATTTCTATGAAcatatgctttaaataaaactgtcctTTAAATGACTCGCTGAAAATCATTGGGCCAGTGCGCTCAGAACtcatttgcattgcattgtgttcTTTGTCCTTGACAGGTGACCGCGTGCGTTTCAAAAGCAGAATTCATCCTGTAAATATCTCCTTTCGTGTCGAATGGAGGAGCGCGTGGGCTCGGATCAAAGAAAGGATGGTCTAGCAGCGTGATTGAGTCATTAGGCTCTCTGAGGGTCCGTTCCCTGTCGGTGTGTTACGCAGCGATGACAGCACTGTCAGACTGATGTCACGTCTGCTCGCCGAGTGTCGCAAAATCCCGGTGACAAGCTCCGATTCTGTGACGACGAAGGCTCGAAACACAGGAGATCCTTCGAGAAACACAGAGGAACCTAAGACAAACACATCAATGCCTCGCCGCTTCTACACCTGAAGGATGAAAGCAGGCTCCGACGGTAATGTGGCTTTTtggaaagagaaatgaaagacTCTTAGCGGGGAGCCTTTGCTCTGTTGTGTCTCGGGAGGAACGAACCTGTCACCGCCGTCACTGTTGCTTGATTTCACGAGATAATGCTTCTTTTTCCCCTCCAAACAACTCCAACACGAAAGTGCTGTAAGGGAGTTTTTATGGATGGGCTGGCTGAAAGCGTCCCTACCGCCTGACAGATATCAGTGAAAGAGGCGTCCTGAGGAATCACAGCTGTCTCTGTGACAGAACGACACTCTGCGAAGCTCACAAAACAACCTGACGCTACGACATTAGCGTTTAGCCAGTCGGAGGAGTCTGCCTGTCAGTCACGCCGAGCGTTTCGTAGGTAATGCAGTCTTTCTGAAATCCTGCCAATAGTTAACGGTAATTCAgctgaatgtaatttattcacaaTCCACCCCtcaaattacatataattagaGAGACTCCTGCATAAATTGCTTGGACATTGTtaaattttctatattttttttactagtttatattaatatattaacattatatatgacatgatatttattttacccAGCAAAACttaactgcatttaaatataaatgtaatttgtaatttttttgtaatacattttaatttttttacattttttttgcataatggaTTCgctaaatgtatgttttgtatgAAGGGctatatcatttaaatgaatgtttttcaggaaataatATTGACATGAAAAAACCTAGATACATAATGAAACACTTCTTTTATCAGATGAATGCATAATAGTTTAATAGTTAAATGTAGCAGcgtaaaaaaaactgcacaaatgTGATATTTGTATCTGGGTGATtcagtttaatatttacatcataattggtgattttaattcatgtacaaaaatgttaatatttttattaatatttattttagtctgtATAGTTCATAACTCAta

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171646 lncRNA downstream 692 25667386 ~ 25667668 (-) False LOC122361130
TU171609 lncRNA downstream 110342 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA downstream 110887 25211393 ~ 25557473 (-) False G116237
TU171618 lncRNA downstream 489753 25177452 ~ 25178607 (-) True G116242
TU171572 lncRNA downstream 585764 25079267 ~ 25082596 (-) True G116212
TU171683 lncRNA upstream 67027 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA upstream 68123 25777832 ~ 25778404 (-) False G116282
TU171795 lncRNA upstream 310816 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA upstream 352582 26062291 ~ 26069534 (-) True G116350
TU171803 lncRNA upstream 361451 26071160 ~ 26128626 (-) True G116359
XM_043260186.1 mRNA downstream 41261 25568531 ~ 25627099 (-) False znf385d
XM_043260187.1 mRNA downstream 41262 25568531 ~ 25627098 (-) False znf385d
XM_043260185.1 mRNA downstream 41263 25568531 ~ 25627097 (-) True znf385d
XM_043261713.1 mRNA downstream 349282 25314054 ~ 25319078 (-) True si:dkey-82o10.4
XM_043261866.1 mRNA downstream 368499 25294224 ~ 25299861 (-) False LOC122360982
XM_043262091.1 mRNA upstream 3202 25712911 ~ 25728665 (-) False nek10
XM_043262090.1 mRNA upstream 3202 25712911 ~ 25728665 (-) True nek10
XM_043261514.1 mRNA upstream 21484 25731193 ~ 25733582 (-) True lim2.5
XM_043260290.1 mRNA upstream 25814 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA upstream 25815 25735524 ~ 25745044 (-) True vsig10l
TU171232 other downstream 1340387 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1993062 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2058519 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2143978 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 2734393 22932627 ~ 22933967 (-) True G115554
TU172219 other upstream 669963 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1097411 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1100608 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1100608 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 1100608 26810317 ~ 26812974 (-) False G116632

Expression Profile