RNA id: TU171631


Basic Information

Item Value
RNA id TU171631
length 2027
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G116247
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25704700 ~ 25706796 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGTTCACTCACTGGTGATGCTGCTCTTGGCAGCGGGGGTCTTGTCAGAAGCGTGTCCTCGTGGGTGTTTGGACAGCAGTGCGGCGGTGGGCAGGTCTGTCAGACGGCTCGCTTTAATGGGCAGAGGCGGGGAGGACGACGGGGAGCGGCTGTTAGAGCTGTCACTCATGCAGGACTCCGGGCTGGGGGCGGAGCTCGAGGAGCAGACGTAGGCTATCACGCCTCCTTGGAAATGAGGAAAAGGGGGAATGTCTTAAAAAtgcacctcaaaaaaaaaaaaagaaaaaaatgcaagcaCAAAACGTACGAGCGTATGAGCACTAAACTTGATTttgaatatgaattaaattttcGGTCACAGAGAAATAAAAGTAACCACAACCATGTAACTAAATCCATGCAATAAGAGCGTTTTGTTTAACCTGGTTGCCAGTATTTCTCCTTTCAGTTTAAGCGGATGCACTGCAATGAGTAAAAAGcgggatttttaaaaaaatgcacattaaaaaaaattgtttataaaaatatggcCATCTATGCAGAGTACTAAACGTGATTTCAAATATGCCTTTTTTAATACCAAAAGAAATCTTACATagttaacaaaataattaaaaaaaatatatatatatatatataaattaaaatgatattaaaacaaaaacattaaattaataactactactactactactactactactaataataatatatattttaaatcagtaaaatttacttttttttggccTAGTTgccaacatttctcattttagttTGTGGATATAGTAagatagtaaaaaaacaaaaacaaaagagaactttttaaaaatgtaaacccagaaaataaaatgttaagatATAGAACAGTTCACtaaaatgaaactcatttgttCCAAAACgtataaaaactgttttttttttactattttttattttatttgaagatgtactaaaataagatatttttttatatatacgcACACTCTAAAAGAAGAATTAAAACTATTATGTACAGcacaaaacatgcacaaatatGCGTTTCCTAAACTACAGAATGGAAATGGAACATTTGAACATTCTTgatgaaaaagataaaaaaaaaaaaaacaaagtaaatgaatcacattacattttccaaaatatgttttactcGTGATACAATTTGACCTGGTCTGTATTCATTGACATAATGAATAACTGCATTACGTCAGCTGATCTCAACAGGCGAGCTGGTCGTCTAGGCATGAAGATGGCACGCAATTATGCTCGCATAAAACGTTATTCTTTATTGCTGACAcaattgtataattatataatctaaTGCGGTGCACACGTTGGATGAACCTCCTCGTTTTGAACAGCTCATGACCTATTTTTAGATGAATGAATCTGCACAGGATTATGTTTAATTACACTAACCTAGTACACTAACACTAATACGGTAGGCTATAATaatcatacataaaataatgagGCTATAATAAAAGCCATACAATTTGATTCCATCccctttgagtgtgtgtgagctgtgTAAACAGTCAATATcacaattatgatatttaagATGTTCCAGTGCGCGAATAAATGGGTTTATTCTACTTTTGCATTCGCAAAAGCAAGCAAAACTGTGTGCATTTCTTTAAACGGACCAGGGAGGTTACCTAACCAGCAACAACCCTTAGTTTCTCAGACCCACCCACACGTGGACCTCTCATGTTTTGTACGGGAAGAATATCTAGGTCACTAGCTGTCTGCCGCTCCTCACGTGGTACTGCAGAGAGTCTCGCGTCAGGGCAGTGTGCTAAATTATGCAACGTGCCGCCTCGACCAATCGGGCGCCGCGCACCGCGCACGTCACGGCCAATCAGCGGCGGCGCCCCGACTCCTAGTACACACGGGCACATGGCTAGGCTACGAGAGCCATGTGAGCTCGAGCCTTCTAGTACTCCGAGTACCGAGCGCGCGTGACGTCACGGGCACTCCTAACCCACATCCACGGTTTGACGGGCTCTACGCTGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252863.1 lncRNA downstream 2166 25664719 ~ 25702534 (-) False LOC122361130
XR_006252864.1 lncRNA downstream 2166 25667082 ~ 25702534 (-) True LOC122361130
XR_006252861.1 lncRNA downstream 2166 25668360 ~ 25702534 (-) False LOC122361130
XR_006252860.1 lncRNA downstream 2166 25668360 ~ 25702534 (-) False LOC122361130
TU171659 lncRNA downstream 9343 25694109 ~ 25695357 (-) True G116264
TU171627 lncRNA upstream 1318 25708114 ~ 25710686 (-) False LOC122361130
TU171683 lncRNA upstream 69940 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA upstream 71036 25777832 ~ 25778404 (-) False G116282
TU171795 lncRNA upstream 313729 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA upstream 355495 26062291 ~ 26069534 (-) True G116350
XM_043260186.1 mRNA downstream 77601 25568531 ~ 25627099 (-) False znf385d
XM_043260187.1 mRNA downstream 77602 25568531 ~ 25627098 (-) False znf385d
XM_043260185.1 mRNA downstream 77603 25568531 ~ 25627097 (-) True znf385d
XM_043261713.1 mRNA downstream 385622 25314054 ~ 25319078 (-) True si:dkey-82o10.4
XM_043261866.1 mRNA downstream 404839 25294224 ~ 25299861 (-) False LOC122360982
XM_043262091.1 mRNA upstream 6115 25712911 ~ 25728665 (-) False nek10
XM_043262090.1 mRNA upstream 6115 25712911 ~ 25728665 (-) True nek10
XM_043261514.1 mRNA upstream 24397 25731193 ~ 25733582 (-) True lim2.5
XM_043260290.1 mRNA upstream 28727 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA upstream 28728 25735524 ~ 25745044 (-) True vsig10l
TU171647 other downstream 28290 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1376727 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2029402 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2094859 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2180318 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 672876 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1100324 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1103521 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1103521 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 1103521 26810317 ~ 26812974 (-) False G116632

Expression Profile