RNA id: TU171793


Basic Information

Item Value
RNA id TU171793
length 2482
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G116350
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26062291 ~ 26069534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattaactaaacatttttttattattattttggaagCGATGAATTGTTGGACATCACCAAAGCTACAAACACTTTTCGGCTTCTATCACTAGTCCATTGTTTTCATAATGtctaatgcacatttaaatcaGATATTGTTAAGTGTCATTTAAGCATCCCAATACTTTCTTTGCGGCCTCTGCTCGGCCTACTTACTAAGCAGCGTCTTTCATCGGCGCACGAAACGCATTCATTAATAACAGCGTAGTGGCCCTCAGGTTTTAAATTGGACTTTAAATAGGTTTGGGCTTTATTCCGGGGGTTATTGCTGGCTGGAAATGCAATAATGAAGCACATATTCAGGGAGAACATTATCGTATTAGAGTATATACAGCATTAACATTGCAAACTGAACGGTCGGCGCTCATGCAGGGTCACTGTGAACGGTCGCAAAAAAGCAGCGCCGTTAAGTAGCGCGCCGCCGCTTTACGTCAAAGCCTCTTCGCCGCGCGCTCTTAAGTGGCGCTTAATTAGCCTGCGGGGGATCGGACTCGAGACTCAAAGGCACAGCTGTCCTTGAAGAGGATCCTGTCAGCGCCTGGACCGAGCTTGATTTACGAGCTCTGCCGCTCACCAGATGGGGGACGGAGAGAACGCGACGCTTAGCGAGGCGCAGTCTCTGGCTAATCGCGTCTTTATCTCCCGCCAATCTGATTCCGAACCGGGCGAAAAAGGCGCGCGTGGAATCTAACGGCCTGCCGCGTTCCATTCAGCTCGGACTGTTGGGTTTTCCCGCGCGCTAACTTGGAAAAAAGGGCGGTCCAGCGCAAGTCCGGAAATTCAGACGGATGTACAATAAAATTCACTGGGATTAAAAAATAACGTAGACGTTGCGGACAAAAAAAGTTAGAGGTTTTTTTGGTGTGTTTACCCTCGCCCGCAAATTGAGGATTTGCTCCCGTGACTTCAAGTCCgcgtgaaatcaaaatgaaatgcattagcTCGCGTTGCTGTTTTCGTGGTCGGagtcagaaaaaaatacaaaaataaagtgcaaaactGCCTTTGTTGTAGTTTAGCGAAATCTGAAAACGCTCATGAGGACGTCAGTTTGAACGGTTGACGGGCGTGACGtcattaaccacgcccctccaaAAGAGGCGGCCGGAACGCCTACTTTATCCAATCAAATCGGAGTAAAAACAAGCCACGCcctctgttttatatttagtttctaTGGTACGCCCACAATACGgaagtaaaatgggttgcaAAGGTCTGACTTTAAATCATGTGCTAATTTGCTCCCTcgtttttgaattaatttaattaaacaatattatgaaTTAGTACGGCATGGCCACAATTTGCTTAAAGAGGAACGAAATAGTACGCTGTAGCCACAATTTACTAAAAAAAGGGAACGAATTAGTAGCTACAACGTAGCTAATATTAATTACATGGAATGGGGCACTACATAAACTGGCAGTACAAACTTGTAGTACATGGCCACAATATactaaaatgagagaaaaaataatAGCCTAGAGCATGACCGCAATttactaaataactaaaacgaGGGAACAAATTACCACAGCGTGGCCacgtttttaaaaaaggcaataaattaaatggaaaCAAATTCTTAATACGTGGCtgtgatttatgcatttttgtctgCATGACATGTCCGGGGCtctgtacaaaatgtttttaaaaaaaagatgcataaaaCACGCTGAACGCTCCTGTCCGTTAGCCGCACACCTATGCTAGCATTGCATAGCATCGCAATTTGGTTGCgagaagaccaaaaaaaaaaaaaaacccgtaAACTGCCATTTTCTTAACCCGCGTGTCATTTCCCAAACACAATACGTGCAGTAaacgcatgcattttttttaatatccaaCAACAGTCTCTGAATGGAACGCGGCGTCGCGCAAACACGACCGCATGTGACCGCAGGGTTTTGGTTATGTCATCGAGGCAGACGTGAGCGTTACATCATCACTGCAGAATATATCATACATTACAGTCATCAACAGCATGGGGAAAAAATACAGTACGCATTTGAAATGACGTTAGGAGGCCTACACGCTAGCGTCTACAATGCAAACGCGCTGAGCTCAATGGGGACGGTGCGTGACAAAGATGGTGGACAAACGCAACGGTTCGAAAAGGCAGCACTGCACTTCGTACCGTAGCTTATATTTGCTCGATTAGTGTTTCTGCTGCCATTTCCACATGCTCAAAAACAGGCCCGTCTAGCGTGTAAGCGCCCTCGCATTTCACCGATTGCTCTCTTTTACGGACGAGTCGAAAAATCGCCTCcgctttaaaaaagttaatcatGGTAAAACAGAGCACGATACTTcaaaaaaggttgttttttttcctcttttcgcCGTTCGATGAATTGGTTTTtagtacaaaatattttcacacacatgGCTTGCGATCAGCcctgacgttttttttttcttttttttttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171683 lncRNA downstream 283887 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA downstream 283887 25777832 ~ 25778404 (-) False G116282
TU171627 lncRNA downstream 351605 25708114 ~ 25710686 (-) False LOC122361130
TU171631 lncRNA downstream 355495 25704700 ~ 25706796 (-) True G116247
TU171659 lncRNA downstream 366934 25694109 ~ 25695357 (-) True G116264
TU171803 lncRNA upstream 1626 26071160 ~ 26128626 (-) True G116359
TU171825 lncRNA upstream 35483 26105017 ~ 26230073 (-) False G116368
TU171826 lncRNA upstream 35483 26105017 ~ 26280057 (-) False G116368
TU171827 lncRNA upstream 35483 26105017 ~ 26230073 (-) False G116368
TU171828 lncRNA upstream 35483 26105017 ~ 26282857 (-) False G116368
XM_043261884.1 mRNA downstream 310191 25746565 ~ 25752100 (-) True etfb
XM_043260290.1 mRNA downstream 317247 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA downstream 317247 25735524 ~ 25745044 (-) True vsig10l
XM_043261514.1 mRNA downstream 328709 25731193 ~ 25733582 (-) True lim2.5
XM_043262090.1 mRNA downstream 333626 25712911 ~ 25728665 (-) True nek10
XM_043260361.1 mRNA upstream 15240 26084774 ~ 26088904 (-) True LOC122360054
XM_043260356.1 mRNA upstream 21844 26091378 ~ 26103408 (-) True si:ch73-90p23.1
XM_043260355.1 mRNA upstream 21844 26091378 ~ 26102780 (-) False si:ch73-90p23.1
XM_043260359.1 mRNA upstream 21844 26091378 ~ 26096909 (-) False si:ch73-90p23.1
XM_043260358.1 mRNA upstream 21844 26091378 ~ 26095778 (-) False si:ch73-90p23.1
TU171647 other downstream 385881 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1734318 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2386993 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2452450 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2537909 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 310138 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 737586 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 740783 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 740783 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 740783 26810317 ~ 26812974 (-) False G116632

Expression Profile