RNA id: TU171795


Basic Information

Item Value
RNA id TU171795
length 2849
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G116351
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26020525 ~ 26073006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGgatcacattatatatataattatataaaactaCATATACTAAACTACaaactttaaattatatatatatatatatatttaaattttgtaattttagttcagtgtttcagaaataaaacattttagaagctcaattgttttactttcattctctaatgtaatttgattttaagaaaaattcTAAGGATTCTAAggatcatatttttaaaacgcaTTTAATCCGACGAAAAGCATGAACATGGTTAAAATGTGGCCCTATCACTATCACCGCTATcaaatgtgtgaaataaatgaGCCTCGTTGCTGATCAATGCATGAACCGAGCACGCGAAATTCAAATACGCCAATCctaaatgcacacattttaatCGAGCGTATCTTTTTTTTGGGTCTCCTTCGACTCAAACCCCTTCTCTAAAAAGCGAACACGTTTCATAGCCAGACCCGACCAGACAACACAAGGTTCTCTGCGGTCATCTTTCTCGCTCGCGGTGAGGCAACGTTGTCGAGAAAGTGAAGTAAACCGTTGACGTTTGTAGCTAAGCGCCTCAATAACACCAGACATCCGCGTCTGCGTGCGTTTCTCTCTGGCCTGAAGCGCTTTTACATTTCTCCTGAATTTGTAACAATCCCGCGACATCAGTGATACACAGTACCGATAACAAGCTTGTATTCTTTGCACACAGCATCTGACCGCTAACTATCCGCCTGCTTCCACGTGCACACCGTCTCCAGATACACAGTATCAATAGACACTGACATTCAgttctgtgttgtttgtttCGCGTATTTCAGTGGCATCGGCTAACGCAACACTAACAGAAACTCGTGCAACACTAAAAAGCGACTTTAAACTGCCTGCTTTCTGCACGCCAGGCTGGTTTCTGAGAGGTCGTGTGAACCCGTTCCAGTAAAAATGCGACAAATATCGCAACCTCGGTTACCTTCGGTTCCTAATTAAATGAGATGCAACAGATGCATATGCTAACGACCACGGAGGGCTATTTGTGCACTTTTTGGTGAATTAAACGCGCAGTGTGCGATGAAATACTAAAAGCGTGGTGCAGAGTGATTTGACACCGCCATCTAGTGGCCAAATggataaattaatttttactgtcAACGACAAATGATAATTAGTCAGCAGCACTGGCATCTAATCTGGCACGAATCCACTTTTATATTGGCAGACTTGAGCTGCAATTAAAAAGCATCCCGATTTTTACTGTCAAGTCGCCGAGTTTTGTATTAAAGCACCTCCAAAGTCGAAGCAAACCCCGAACTAAAGCGCCGTAACATCTTGTGCAATGACCCAGAGCAAACCTGAAGGGGTTATAGAGATAATCAAGCAAATATTTGGAGGTGAACCGTTCAACTACTTCCTTCCATCTCGGGTTTAATACGCGCAGGCAACTATAAGCAAGCCGTTCGTAAACACAGACGAGGGAAGTGTTTGGGAAACggacagaaaatgcattttacaagcAGGGTTTGTTGGGCAGAGTTTTATTTGAGTTTGtgatttaattcaaatatttttcacagCTAGTTTTCCTGTTAGACGAACGCCGCGTTTTCTGTGTGCCTTGATTCGCTCTGCTCTGGCTGGGTCTGAAAGCTAGAAAATGCTCTTCACAAGCGGTCAGTGTCTTGTTTCCGTCACAAAATATGAGAGAATAGAAAAGCTAATAATTTTATCTTACatgtctgatgttttttttcatcacaattctgagttatatatatattttttatgtatacacggatttaaaaaaataaaaaaataaataattaatggcAATTAGATGTAATTTTAGAATCgcaaggaataaaaaaaatctgaattatgaaatatacatttttaattctgaggaaaaaaaatgagaatcgagctataaactaaacaaaaaactaaataaaatattttgaggaaaaaagtaACATCTCTCACGATTtcaagatataaactcaaaattgtggaattctgagaaaaagtaaaaaatgaggtaaatctgagaaaaaaaagagaaaagctgcAGGATGTGAGCTTCAACGGGACGAAAAAAATTGCATACTTgcaattaaaaaaggaaaagaaaaaagaaataactagCTGTAATGAGAAGTCGGAATGAACTTGCgataacaaaaactgaaaaaataaagttgtgAGATGCAAATTCTGCAttccgagaaaaaaaaaagaattcagaGCTCGtttttcacaattctgaggTTATATCTAGTCAGAAGTTTACATGTCTAGGGGATATTTAGTGGCAGAAACAGACTTCCTCATCCGGCACTAAGAGCCCCGTCCCACACCAGACCTCTATCTCAGTCCCCTCTGAAAGAGAGAGCGCGGGAATCACGAGGGGACATGATCCCGGCGCCAGCAGCGCTCCGTCACGATAGTCACACATCCATAGAAACTCCACCcaaaacagacatttacatGCGTTATACCCACACCGAGAATTGCAACAACATTtcatactgtttttttcttttgttttacttatATTTGAGGAGAATACGTGTACACAGAGATGATCGGCGGGCCTCGAGGGCGATGCTAACGTGAGCTCGATGAGGAAAGAGCGGACTGACAGCAGGATAAAAAGCTTAAGAGACGAGGGGAACATCGGGAAAAAATCACCTGCTTTTGTGCTTGAAATCAAACCTCACGCAGAGGcagaaaaaagtatttagacGCTTAAACGTCATTTAAACGTCTTCATGTCAAAGCATTAGGTTTCTTTTCTAAAAGCCATTTTTGCAAGGTCAAATAGTTTTTAGCATTTGAATGATGTCTACGtctcagtttttttatttatttatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171683 lncRNA downstream 242121 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA downstream 242121 25777832 ~ 25778404 (-) False G116282
TU171627 lncRNA downstream 309839 25708114 ~ 25710686 (-) False LOC122361130
TU171631 lncRNA downstream 313729 25704700 ~ 25706796 (-) True G116247
XR_006252861.1 lncRNA downstream 317991 25668360 ~ 25702534 (-) False LOC122361130
TU171825 lncRNA upstream 32011 26105017 ~ 26230073 (-) False G116368
TU171826 lncRNA upstream 32011 26105017 ~ 26280057 (-) False G116368
TU171827 lncRNA upstream 32011 26105017 ~ 26230073 (-) False G116368
TU171828 lncRNA upstream 32011 26105017 ~ 26282857 (-) False G116368
TU171830 lncRNA upstream 32011 26105017 ~ 26230073 (-) False G116368
XM_043261884.1 mRNA downstream 268425 25746565 ~ 25752100 (-) True etfb
XM_043260290.1 mRNA downstream 275481 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA downstream 275481 25735524 ~ 25745044 (-) True vsig10l
XM_043261514.1 mRNA downstream 286943 25731193 ~ 25733582 (-) True lim2.5
XM_043262090.1 mRNA downstream 291860 25712911 ~ 25728665 (-) True nek10
XM_043260361.1 mRNA upstream 11768 26084774 ~ 26088904 (-) True LOC122360054
XM_043260356.1 mRNA upstream 18372 26091378 ~ 26103408 (-) True si:ch73-90p23.1
XM_043260355.1 mRNA upstream 18372 26091378 ~ 26102780 (-) False si:ch73-90p23.1
XM_043260359.1 mRNA upstream 18372 26091378 ~ 26096909 (-) False si:ch73-90p23.1
XM_043260358.1 mRNA upstream 18372 26091378 ~ 26095778 (-) False si:ch73-90p23.1
TU171647 other downstream 344115 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1692552 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2345227 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2410684 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2496143 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 306666 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 734114 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 737311 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 737311 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 737311 26810317 ~ 26812974 (-) False G116632

Expression Profile