RNA id: TU171803


Basic Information

Item Value
RNA id TU171803
length 457
lncRNA type read_through
GC content 0.40
exon number 2
gene id G116359
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26071160 ~ 26128626 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atATCATAAACGCCAAACTTTAGATGAAAACACAACactttattgaaccttttctgataagaagtgtgcaaactcaagcatttttgaCGATCGTTTGAAGTGTTTTATCACAGCTGTCGTCGGTTTTATTGTCATGCAGCATacgatcatatttctaatttgaggctgtattacgCCGATTCTGGCACCCAGCGTCACAAGAAGTTGATCATTTTAGCTCCTTATGTAGCCGAGTGCGCCTCATTCTTCCCTGCTTCACATCCAGCTAGCGCCGTGACGTCGTTACATTCGATTGGCCTGATCGTGCGTCACTCagaaaaaacaggccaatcagaagagaggctcatgaatattaattagacagTCCAAAATCGAGCTGTTTTTGgaaaggagctgtaaaaacacatcgagatggtttttgttacttttaccacaatatatatatatatatatacac

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171793 lncRNA downstream 1626 26062291 ~ 26069534 (-) True G116350
TU171683 lncRNA downstream 292756 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA downstream 292756 25777832 ~ 25778404 (-) False G116282
TU171627 lncRNA downstream 360474 25708114 ~ 25710686 (-) False LOC122361130
TU171631 lncRNA downstream 364364 25704700 ~ 25706796 (-) True G116247
TU171807 lncRNA upstream 1654 26130280 ~ 26130806 (-) True G116360
TU171824 lncRNA upstream 86422 26215048 ~ 26230073 (-) True G116368
TU172227 lncRNA upstream 257172 26385798 ~ 26386007 (-) True G116611
TU172236 lncRNA upstream 293092 26421718 ~ 26483705 (-) False LOC122360302
TU172235 lncRNA upstream 350897 26479523 ~ 26483705 (-) False LOC122360302
XM_043261884.1 mRNA downstream 319060 25746565 ~ 25752100 (-) True etfb
XM_043260290.1 mRNA downstream 326116 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA downstream 326116 25735524 ~ 25745044 (-) True vsig10l
XM_043261514.1 mRNA downstream 337578 25731193 ~ 25733582 (-) True lim2.5
XM_043262090.1 mRNA downstream 342495 25712911 ~ 25728665 (-) True nek10
XM_043262041.1 mRNA upstream 5622 26134248 ~ 26173373 (-) False LOC122361084
XM_043262040.1 mRNA upstream 5622 26134248 ~ 26173373 (-) True LOC122361084
XM_043262043.1 mRNA upstream 5622 26134248 ~ 26173371 (-) False LOC122361084
XM_043262042.1 mRNA upstream 5622 26134248 ~ 26173371 (-) False LOC122361084
XM_043262044.1 mRNA upstream 48506 26177132 ~ 26204649 (-) True ago1
TU171647 other downstream 394750 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1743187 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2395862 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2461319 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2546778 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 251046 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 678494 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 681691 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 681691 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 681691 26810317 ~ 26812974 (-) False G116632

Expression Profile