RNA id: TU171827


Basic Information

Item Value
RNA id TU171827
length 524
lncRNA type read_through
GC content 0.25
exon number 4
gene id G116368
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26105017 ~ 26282857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttactttttttttttttttttctggacagtttatttatttttttattcaaaaccatttaaaacaaagcattttaagAGTCACTGAATATCCTTCCACGGTTGCAGAACATAActtaataaaacaagacaagcTCAGAACACACAGCTCTAAAGAAATCGAAGGTTCACATTGTAAATTTATTCAACATTGTTgccttatttactttttttttttttttctcctcgtGACAATTTCATTgtaacttcttttaaaaaaataaaaacgaaaacacAGTATTTGTACGTTTAAATGCTAACGACATGGTGAAAAGCCTTCCGAAAACGTTTTACAAACACTCTTAAGCTGCCTTTTGAGAATGTTTGGTGTTTAAAATCCAAAGATAaaccaagaaagaaagaaagatagatagagcagtaaaacaaaactttaGGACAATgcacttgctttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171795 lncRNA downstream 32011 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA downstream 35483 26062291 ~ 26069534 (-) True G116350
TU171683 lncRNA downstream 326613 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA downstream 326613 25777832 ~ 25778404 (-) False G116282
TU171627 lncRNA downstream 394331 25708114 ~ 25710686 (-) False LOC122361130
TU172227 lncRNA upstream 155725 26385798 ~ 26386007 (-) True G116611
TU172236 lncRNA upstream 191645 26421718 ~ 26483705 (-) False LOC122360302
TU172235 lncRNA upstream 249450 26479523 ~ 26483705 (-) False LOC122360302
TU172267 lncRNA upstream 390217 26620290 ~ 26678901 (-) False G116633
TU172274 lncRNA upstream 442851 26672924 ~ 26673379 (-) True G116638
XM_043260356.1 mRNA downstream 1609 26091378 ~ 26103408 (-) True si:ch73-90p23.1
XM_043260355.1 mRNA downstream 2237 26091378 ~ 26102780 (-) False si:ch73-90p23.1
XM_043260359.1 mRNA downstream 8108 26091378 ~ 26096909 (-) False si:ch73-90p23.1
XM_043260358.1 mRNA downstream 9239 26091378 ~ 26095778 (-) False si:ch73-90p23.1
XM_043260361.1 mRNA downstream 16113 26084774 ~ 26088904 (-) True LOC122360054
XM_043261370.1 mRNA upstream 10707 26240780 ~ 26246320 (-) True LOC122360601
XM_043261373.1 mRNA upstream 20019 26250092 ~ 26251859 (-) True LOC122360605
XM_043261371.1 mRNA upstream 29903 26259976 ~ 26263633 (-) True LOC122360602
XM_043261372.1 mRNA upstream 34671 26264744 ~ 26267349 (-) True LOC122360603
XM_043261374.1 mRNA upstream 37860 26267933 ~ 26270145 (-) True LOC122360606
TU171647 other downstream 428607 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1777044 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2429719 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2495176 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2580635 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 149599 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 577047 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 580244 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 580244 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 580244 26810317 ~ 26812974 (-) False G116632

Expression Profile