RNA id: TU172235


Basic Information

Item Value
RNA id TU172235
length 2416
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC122360302
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26421718 ~ 26507052 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCTCTGGAGAAGCACTGCCGTGTGGACGCGGGTTTCTCAGGAATCAGAGACGTGTACTCCTCCACGGTCAGTCACGACAACATGCAGCAGAGCTTCTTCTTGTCCGAGACGCTCAAATACTTGTACCTGCTGTTCTCGGACGATGATCTCCTGCCGCTGGAGGACTGGGTGTTCAACACAGAAGCTCATCCGCTGCCCGTTATACGCAAGAGATGCCTGCAGGAGCACAGCGTCACACCAGACCACGGACAGACCGACCCGGAGTAGTCTttagccacacacacacacacacacacacacacacacagggattCAACCTCACGGGTCCCGATACGGATTCTCAGCTCCTTTCCTGTAAAGGAtctcttcatatatataaatatacgcTGTGATTGTATATCTCTGAGCCGAGGTTTCCCGCTCTCCGGCGCAGTTTTCCGTGGACAATCAGTGAAACGTGACTTTCATGAGAAGAgcacctttttttctttgcttctttcctctgtgaggaaaaaaaaaaccccagaataACTTGCAGCCCCGAGTCCGTGGGAGGAGAGCCGTACGACGGCGGGCCACGCTGAGCGAAAGAGAAAACCACTTTTCTTCACGTCTCACCTgtaatttatctttttctttcatcctttcattGTGTATTCCTTTCCCGTCTCTTCTGCCAAAGCGTTTGCGgtcttttttatttccttttctctcCCAGCACCCTGATATTTTGTTCTATCTAGTTTCGAGTCCAATTTCGtgctatgatttttttattttttttttttgattatttccaaGGACTGGGGTATTTACAAACCCGACAAAAGGATCCTTTGTGAAATGCGTTGTACAGAATCCTTCGGTTTGAGAGATGTCGTTGGCAGGGCAGGATTGTTTTACGTgattttaaacttaaactggtatttttttatgcttcgACTGCATTGTGAGCCTCGGTGTTGTGCACGACATGCCATGTTTCAAAGACCAGCATCACCAGAGCGGAAAAACTCACTTGCACTGACGGCGGACGGCCACTAGGGCTGGGCGATTAAATACCgaaaattcattatattttcgCAGCGAATTGCAcgcaattattttaatgttcatttttaagtcAGACTGGTCTCGTGGCGGTTCTTCGGTTTCAAAAACACGATTCACGTTTGATTCATTTCCATGAATGCCTTTTCGAACTGTGTTTTTGACGAATCGCTTCAGAAAAGCTCGGTTCAGAAACGCTAGCAATTGTGAATCACCGTTATTTTAATGCTCGTTAATCGGACTATTCAGTATCGGAAATAGCAATTAAATTTGATCCATTTCTGCAACTCGCttaaaaatgattcagtgaattaattcaaaaacaaaaatattacgaattaaactattattacaaagtgctttttttattcattcgttAGGTTTCATAAAGATTGACTTAAAATAGTGGCATGATTCTTCTTCAGTGTCAAAAACAGCCGTTTGATTCCTTTCCATGAATCGATTCGAACTGTTCGTTTCAGTGAATGGATTCAAAGCTCATTCGCATAATTGTTTGAATGCgctttttaaatgtgctcaGTTAAGTTTCGTCATTGAGTATCAAATTAATTCAGtctctaaaaaagaaaaaacgctTGTATTAATTGATTCAAAACACCAAAGGTGCGATCGAATCCAAATCGAATCAACCGTCAGATTGTGAATCATATAGTTATTTGAATTCTTTTTGTAATGCGTTCGTTATATGTCCCCAAAGAcataatttcatcatttttcCACAGCGTTTAAGTTTAAGTCACCTACACgaatcaaaacagatttttgattGCGAATCATGCAATTATTTGAATCAAGTTTTGCATCATCAGACTAGTTTCTAGTTTCAAACGCGCCACTTAAGTTTGATTCATTTCCATGAATCAGTTCAGATGAGTCAAAACCCTGAAACGAagttaaaaaagtgttttatttagttttagtagaCCTATCTGTAGGTTAATATTGCAGTTCACGATTCAGTCAATTCTCCGTGTCGCCCAGCCCTGTCGCCGCAGTCGTCTCAAAGCATCGATGgtgaatgtgaatgtttttttctgggGTTTTTGTCCCCGAAGCGACAGCGTCAGACAGTAACGGTGGAATGAATGTGAGTGATTCATGTCATTAATTGttcctgttttctctctctttctcttttctaatTTTTATGGATGTTTATGAAAGACTCGCTCTTTTGGTTTTCCTCAGGTGTTTCTGTACAAGTTTTGATTACAGTTATTTGCACTATTCATTACGGTAGTGCCGATCATTGTTAATTTGAACGTCTTCTGTCTCTCATTgttgaatattttcaaatactGGTAAAAGATCTGTGcgatttatacatttaaaaacgaGTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172227 lncRNA downstream 93516 26385798 ~ 26386007 (-) True G116611
TU171828 lncRNA downstream 196666 26105017 ~ 26282857 (-) False G116368
TU172267 lncRNA upstream 136585 26620290 ~ 26678901 (-) False G116633
TU172274 lncRNA upstream 189219 26672924 ~ 26673379 (-) True G116638
TU172268 lncRNA upstream 192893 26676598 ~ 26678901 (-) True G116633
TU172283 lncRNA upstream 255400 26739105 ~ 26739861 (-) True G116647
TU172284 lncRNA upstream 257871 26741576 ~ 26743789 (-) True G116648
XM_043261794.1 mRNA downstream 164678 26299517 ~ 26314845 (-) True fam110d
XM_043260419.1 mRNA downstream 205832 26270993 ~ 26273691 (-) True LOC122360092
XM_043261374.1 mRNA downstream 209378 26267933 ~ 26270145 (-) True LOC122360606
XM_043261372.1 mRNA downstream 212174 26264744 ~ 26267349 (-) True LOC122360603
XM_043261371.1 mRNA downstream 215890 26259976 ~ 26263633 (-) True LOC122360602
XM_043261922.1 mRNA upstream 338452 26822157 ~ 26868971 (-) False ubr5
XM_043261919.1 mRNA upstream 338452 26822157 ~ 26868971 (-) False ubr5
XM_043261921.1 mRNA upstream 338452 26822157 ~ 26868971 (-) False ubr5
XM_043261918.1 mRNA upstream 338452 26822157 ~ 26868971 (-) False ubr5
XM_043261920.1 mRNA upstream 338452 26822157 ~ 26868971 (-) False ubr5
TU172219 other downstream 95336 26379672 ~ 26384187 (-) True G116604
TU171647 other downstream 803113 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 2151550 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2804225 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2869682 23588185 ~ 23609841 (-) False usp45
TU172308 other upstream 323415 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 326612 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 326612 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 326612 26810317 ~ 26812974 (-) False G116632
TU172337 other upstream 390693 26874398 ~ 26876610 (-) True G116668

Expression Profile