RNA id: TU172261


Basic Information

Item Value
RNA id TU172261
length 1836
RNA type TUCP
GC content 0.38
exon number 3
gene id G116632
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26810317 ~ 26812974 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acatgtaaatgcttttctatattcattttattacatttgatattatatataaatatgtttaatatataaacacaacatattttaaattaaatacacatgcatgagtttgcatttatatatacataataaatacacacggTATGCACAAATATGTCATgtaaagaaaacttttattttggttgttgtGATGTTGTGTGTgctctttttaaaatctatattttagattttataggCGATTTTAGACGTTAAGGTTTTGAATGCAGACGTTTAATAACATCTAAAAACACCATTgagtgtcaaaataaaaaatgaatggcatctgtttttatttatatttttgattgtaTTTACTCATTAATATGTTTCTGTTTATCTCAATGAATatcttttaaaagcatgcatagCCTATATGAGCCATTATGAGTGATGCATCATTAAAATGtcttcacattttttattttaatatttaaaaaaaaaaaaattcctgaaAGGTTGGACTAATTTCTCATGACAAAAATATTGTACTTGTCACACTGGAgcaggctgtgtgtgttttatatgacAGTTTCATACACTTTATTAATTACAGTAGATGCTGACCTGATGGTTTGGTGTTTTTGTATGTTACGGTTTACCCTGCTGTTCATATTTCAGCAGGTTTTATGGCAATGCTTATGTATTGCTTGTATCAAAtcataacaaacacacactggtaTGATAAATCAgagctttatttaaatcttcACATCTTCTTGCTCCTCCTGACCATGCTGGTTCCTGCTACTGTCAGcgtctgCCATCTCTCCTCCCTTGATCTCCTGGATGTGAGAGAATCGATCCGTCTGACAGACCAGCTTCCCTCCCTCCAGCCTGACAATGCACTATGTATAAAACATCTTCTACCTTGAGCTTCTTGCCGTCCATGGTGGTGATTTCAGCTTCCTTGCCGATGGTGAAGGAGTTTGTGACGGTTTTTCCAGGGGTTTTGGATGTGATGGTGAAGTCGTTGCCGTTTTGTTGGATTTCAGTCACCGGTTTAACATCCTTGGCCATTTTAATGACTTCTTCTGGCAGAGCTGAAAGGAACAGAAGCACGAAGACAGCGAGTGAGGGGTCTAAGGTCACGCCTGCGAATTCAAACCAAAAAATGCAACGCTTTGGGAAATGCAACCGCCACGGTTTGACGGGAACTCACAGATGGCTCTCAGGAAGTCCTCGTAGTTCTCCTGCACGTAAACCTGCCACGTCCCGCTGAAGGCCATGTCCGCTGCTGGTCTGAGCGCCGGAGAGAGCTCACCGCTCGTCCCCGACCGGAGCTTATACTCACCACCGGTTTAATCATTCACGCTCTGGCAGGTTTCCACGCTGTTTGAACAACCCAGCGTTCGCTGACATTATCTGTGGGGTCGTGCATCTCTCAATGCGATAAGGGCATCCAGTCCGAGCTTTTGACTCGCATCCATTCATCTAGAGAATCTTAAACGAGATTTAGAAATCTGTGCAGTTTGGCGAAGTCAGagagttcatttcttcaggGATGCATTCAGTTGATTAAAAGCAACATGGCATGCATTTATACACAGAAGACTTCTGTCTCAAATAAACGGCGctcttctgaactttctataagattcttttcaaaaataaaacgaatCACTGCGTTCATGAAATATTGGTCAGCACtagtgttttcaacattgattcCAATCAGAAATGAGCAGCAAAGGATTTCTAATGTGCAtctattagaatgatttctgaaggattgtgacagataatgatgctgaacatGATGCTTTGATgcttcacatagaaaacagatagtttaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172284 lncRNA downstream 66528 26741576 ~ 26743789 (-) True G116648
TU172283 lncRNA downstream 70456 26739105 ~ 26739861 (-) True G116647
TU172267 lncRNA downstream 131416 26620290 ~ 26678901 (-) False G116633
TU172344 lncRNA upstream 3211 26816120 ~ 26818848 (-) True G116670
TU172333 lncRNA upstream 4123 26817032 ~ 26874360 (-) True G116666
TU172385 lncRNA upstream 340437 27153346 ~ 27213613 (-) True G116696
TU172391 lncRNA upstream 342186 27155095 ~ 27157490 (-) True G116700
TU172404 lncRNA upstream 426077 27238986 ~ 27240139 (-) True G116710
XM_043260794.1 mRNA downstream 303265 26479518 ~ 26507052 (-) True LOC122360302
XM_043261794.1 mRNA downstream 495472 26299517 ~ 26314845 (-) True fam110d
XM_043260419.1 mRNA downstream 536626 26270993 ~ 26273691 (-) True LOC122360092
XM_043261374.1 mRNA downstream 540172 26267933 ~ 26270145 (-) True LOC122360606
XM_043261372.1 mRNA downstream 542968 26264744 ~ 26267349 (-) True LOC122360603
XM_043261922.1 mRNA upstream 9248 26822157 ~ 26868971 (-) False ubr5
XM_043261919.1 mRNA upstream 9248 26822157 ~ 26868971 (-) False ubr5
XM_043261921.1 mRNA upstream 9248 26822157 ~ 26868971 (-) False ubr5
XM_043261918.1 mRNA upstream 9248 26822157 ~ 26868971 (-) False ubr5
XM_043261920.1 mRNA upstream 9248 26822157 ~ 26868971 (-) False ubr5
TU172308 other downstream 1171 26807120 ~ 26809146 (-) True G116654
TU172219 other downstream 426130 26379672 ~ 26384187 (-) True G116604
TU171647 other downstream 1133907 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 2482344 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 3135019 23669898 ~ 23675298 (-) False mchr2a
TU172337 other upstream 61489 26874398 ~ 26876610 (-) True G116668
TU172354 other upstream 141311 26954220 ~ 26955834 (-) True G116677
TU172373 other upstream 181258 26994167 ~ 26998359 (-) False LOC122360878
TU172454 other upstream 545798 27358707 ~ 27360829 (-) True G116745
TU172389 other upstream 707281 27520190 ~ 27579864 (-) True LOC122360079

Expression Profile