RNA id: TU172462


Basic Information

Item Value
RNA id TU172462
length 2188
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G116748
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27372529 ~ 27375167 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTACAAACAAATCAGGGTCTGATTCTACAATTATTCATTCTTTCcaaatacagatatttaaatCATCCAGTCAAAACgcttgtattttttataatcacaaataattttttttttgttttcctatcACAAATACCGAAAGAAACCctgtattttttcatgtcatcaatattacaaaaaagtgtttttttatacatttttttatattgcaaatacagcagaaaaatatttcctgtattttttcatgttgCACACACAATGTATGAGTACATTGTAGTTAAacattctgtaatattttaaaactaaattttatcATATCACAAATATAGAAAAATTCTAtattctgaaacaaaaacaagaatttgcaataaaaaaaagccaggTTTTCAGTATAGTATATTCCAAATACTGCAGAAAAGCTAAACATTCTGCATGTTGTCATACTGCAGATATTGCATACACCGTTTTCACATCGCCAATATTACAGGAAAAAAGTCTTAATGTCAATTTTGTTAACGATGCTGTGCAGCCCTTGTTTCTGCTCGGAGACAGCGGCAAGGTGAGAAACGAAGCGCTTCCTGTCTCTGATGCTGTGATTGGCCGGCTGTTATTCATGTGAAGGATGCTCGCTGCATGGTTTCACAGCATTTACACAACTCTTCTCGTGAGACAAACCATCCCTTAAAAGTGTACTGTTAGTATACTTCTTCTTTACAAAACAAGGgacgttttattcatttacccTCATTCAAGACTGCAAGACGCTGGAATAAAACCCATGTCAAGCAAATacttaatagaaaatatatacaataataggGACATATTAGTATACTTAAAAGTACGACGTACAGTTCAGTTGCAGTATAAAACTAAAGTATTTAATGAGTTCACTTTTAGTATAGTTGCTGTTTAAGTCAAAAAGTTACGTAAACTAGTGCTATACTCAAGGTTTACTACTGTTAGActtaaagtatacatttatagaCTAGAAAATGGGTCAACTTAGTCCCTAGCAGTACTGAAATAGTATGCTCAAGAGTATACTACGAGTACACTGATGTCTACTCAAAgtatacataaaattatatttaagtatacTTAATAAAGGAAACTTTTATATACTGGAAAACAGGCATATTTCATCCCAAGGAGTTCTTAAATAGTACTCTTGCAAGTATACTACTACTATACTGATATTTGTACACTTACTAGataaagtatacttaaaaatatactagAACtctacttaaatatatttaataaaagacacTGTTATAGACTAGAAAATAGATCAATTAAGTCCCTAGCAGTACTGAAATAGTATGCTCACGAGTATACTACGAGTACACTGACATCTACTGAAAGTATAGATAAAATTATACTTaagtatacttaataaaatcaacTGTTATATACTAGAAAATGGGACTATTTCATCCCAAggagtatttaaatattactctTGCAAGTATACTACTACTATACTGATATTTGAACACTTACTGCataaagtatacttaaaatatacttgaactctactgaaatatatttaataaaagacacTGTTATATACTAGAAATTGGGTCAATTTAGTCCCTAGCAGTACTGAAATAATATGCTCATGAGTATACTACGAGTACACTGACATCTACTGAAAGTATAGATAAAATTATACTTAACTATACTTAATaaaataaactgttatatACTAGAAAATGGGCATATTTCATCCCAAGGAGTATCAAAATAGTATGCCTGCAAGTATACTACTAGTACACTGATATACTAGAAATCTACTTAAGTATACTTAATAAAGGAAACTTTTATATACTAGAAAACAGGCATATTTCATCCCAGAGAGTATCAAAATACTATGCTTGCAAGaatatactactactacactGATATTTGTACACTTACTAGataaagtatacttaaaaatatactagAGCTCTACtgaaatatacttaataaaataaaccgtTATATACTAGAAAACGGGAATATTTCATGCCAAGGAGTATCGAAATAGTACGCCTGCAAGTATACTACTAGTACACTGATATTTGTATCCTTACTGCataaagtatacttaaaaatatactagAACTCAAGTTAAGTATACTTGATGAAACGAATGAATGGAGTATACTACTTTTTCTTCACTGTGAATGTGtttgagtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172429 lncRNA downstream 1152 27367832 ~ 27371377 (-) True G116730
TU172418 lncRNA downstream 64308 27307776 ~ 27308221 (-) True G116723
TU172416 lncRNA downstream 64964 27299494 ~ 27307565 (-) False G116721
TU172415 lncRNA downstream 64964 27306619 ~ 27307565 (-) True G116721
TU172405 lncRNA downstream 131438 27240615 ~ 27241091 (-) True G116711
TU172433 lncRNA upstream 3520 27378560 ~ 27489679 (-) False G116733
TU172424 lncRNA upstream 63472 27438512 ~ 27478643 (-) True G116727
TU172426 lncRNA upstream 101203 27476243 ~ 27478643 (-) False G116727
TU172434 lncRNA upstream 105260 27480300 ~ 27489679 (-) False G116733
TU172435 lncRNA upstream 105260 27480300 ~ 27489679 (-) True G116733
XM_043260797.1 mRNA downstream 114519 27242882 ~ 27258010 (-) False brd9
XM_043260796.1 mRNA downstream 114519 27242882 ~ 27258010 (-) False brd9
XM_043260795.1 mRNA downstream 114519 27242882 ~ 27258010 (-) True brd9
XM_043260800.1 mRNA downstream 129790 27229786 ~ 27242739 (-) False zdhhc11
XM_043260087.1 mRNA upstream 861 27375901 ~ 27381789 (-) False si:ch211-269k10.4
XM_043260088.1 mRNA upstream 861 27375901 ~ 27381789 (-) True si:ch211-269k10.4
XM_043260399.1 mRNA upstream 163353 27538393 ~ 27558972 (-) True LOC122360076
XM_043261498.1 mRNA upstream 238733 27613773 ~ 27621631 (-) True LOC122360683
XM_043260097.1 mRNA upstream 247589 27622629 ~ 27627516 (-) True LOC122359885
TU172454 other downstream 11700 27358707 ~ 27360829 (-) True G116745
TU172373 other downstream 374170 26994167 ~ 26998359 (-) False LOC122360878
TU172354 other downstream 416695 26954220 ~ 26955834 (-) True G116677
TU172337 other downstream 495919 26874398 ~ 26876610 (-) True G116668
TU172263 other downstream 559555 26810317 ~ 26812974 (-) False G116632
TU172389 other upstream 145150 27520190 ~ 27579864 (-) True LOC122360079
TU172557 other upstream 248387 27623427 ~ 27627660 (-) False LOC122359885
TU172608 other upstream 332676 27707716 ~ 27727944 (-) False G116836
TU172609 other upstream 417664 27792704 ~ 27804770 (-) True G116836
TU172659 other upstream 588448 27963488 ~ 27964958 (-) True G116868

Expression Profile