RNA id: TU172609


Basic Information

Item Value
RNA id TU172609
length 3290
RNA type TUCP
GC content 0.37
exon number 3
gene id G116836
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27707716 ~ 27804770 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTATctttattgaaaaatgtaacaatattgtACAGCGTTTTAAATGCAACAGCATTCCAAAGactgaataacaaaaaataaaaaggtattttaataaTGACTGGGAAGGTCAATCCATGAGACATTCAAAAAGCACACCGACACATAAGTCAGGTACATTCATGTGTAATGCTTGGATAAATTAATGTGATAATAGATGAACGAACATGATTATCTAGAATAACTTCAGACTAAATGTGCCACAGTACAGCAagcacatattttaatttatccaAAACAAGTCAAAGCAATGCAAGTATCCATcagttttcaaattaaatttgtattaaaatatatgatctGATCATCTGTTCTAATGGCACTAAAGTACACAGGATACAGTTAAATGCACAGCTAAATCTATGCCAAAAAGATGCATGAACATGAAAAATTGACCGAAATATGGATCTTGGTTTGCACAGAAAGTAAATTGTATGCTCcttattttgcaacatttatgAATATAGATCGATACATAGGTAgtttcttaaattatatttatttatagaatacatttgaatatacCATGTATTCATCCATGAAACAAGTAGTTCATCATGTAGTCAGTTTTCAAGATGACACTGCTTATTAACTTGAATAATATTTATACCACAACCAGCATTCTTTAGATTAGTGTGAAATAACTCGGTGATGTAGTGATAAAGGGAGACGAGGCGTGAAGAAATGCAATTGTgcgattaaaaacaaaaaaacaagagctAAAGGAAATGACTGTGTACACTTGAGCATGACCTTCAGTCATCAGGGAGATAAAGCTGCATGTCGATGAAGTCTATTAGTGTAAGACGAAAAGGCAAAGGCAATAAAGAGCTTGGGTTGCGCAGAAAGCTTTCACGATCACTTGCATCTCCTCAGCACCTCCTGCATTTTCTCCTGCACGTTCCTCATGTTCTCTTCCCACTCTTCGTTTCGAGATTGCAGATCATCCCCCATGATGCCATAGTAGCCCATCAGAGCGATGAAACCGATGCAGAACAGGTACGCGAGTCGAGTGCAGAGGTTTTCCATGACGCGCTGGTCACCCTGCGAGTGCTTCATGTAGACGTCTAGGATGGGCTGACTGAAGAGCTTGCGCTTCCCCATCACACCTTCATAAAGCGTGTACATGTTCTGGTCATCTTTATCATTGATGAAGCTCTCTACGAAATCATCCTTCTTGCGCTGCACGTTCTCCGGTTTGGCCTCCACGATCTCCATGAATTTGCGGAACTGATTGCGAATGTTTTCTTCCACCTCGTGGTACTGTTTGTCCACCGTTTCCTTCCTGATTTGCAGCAGGGCTTGACGGTTCTGCTGTGAGATTTCGTCGATTGCTCGATTCACGCTGCCGAACTCGCGCTTGAGTTTCTGGATGTCCTCGTCGTCCACGTGGTGCAGCACCACTCGGATGAGAGATCCAGCCACGCCGAAGATGGGATTGACCACCGCTGCTGCGGACGAGATGGTGGCCACGCATTCCAGAACCTTCACCAGACCCCTCTTCAGCTTCTCTGGGTCCTCAAATATCTCGTTGTCAGCCATTGTGTCCGGAGGAAGACAGTCTTATCGCACTGCCTGCATGTCAACTTGGCCACTTCCCTTGGACAGCCAGCCAAGGAATACAGACACAACAATTGCAGACCATCTCTATCAAGCCAGAGCACAACAATACAACATCTCCCTGTGTGTTCCCAACCAATTACCAGGGtggtttgtatttcaaataaattgtcTTCATGCATTATTTAAGGTAAGCacatttttctactttaaaatcattattattccATCACCACCACTATTTTAAcactaaaaatgttcaaatgcatttcaatttgAATTTCAGTTCAGATAAGATAATTAAAAGATCCTGGCTagtgtcagatttttttttaacagtttattccAATTATATCTATGCACATTATATTGTGTTGTGCATACTTTTCCAGAAGTAGTCTACATTAAGTCTTACAACCCTCCCAATCTACTCACCcatcaaatttcatttttgttcggCATGTcggcatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataataaaaaaaaaagaacctgtAAATGATTTCACTCTTTTCCTGGTTTTAACTGGTTCAGTTAATACGTGCAGTAGTGGTGTGCTatacaaacaaaactgaaactaaataataaaaacgctTACCGGCTTCAAAAActgaaggaaaaagaaacaacTGGGAATATTTACAAagcaatgaatcatttaaacatttcaaatgcaagAAGCCTATCAGTGCGAATACTATCCGACATTCGAGCGCaggatcatttttaaacatgcatccCTAAACTTATCCCAAACAAACAAGTGAGTGAGTAAGGCTACACGCGCCCTGTGAAATCTGATCTAATGCGAAACATCGTGAAATCATCTGCAAATGATTACGACCTCTGGTGTGACGCTAGGAATTAAGACAATATACAaaggcacaataaaaaaaataaatgtcaaaccGGGACTCACACACAGGTTTATGGTTCATGTAGATTGTGTTTATGTGTCGTGTCCGTCTGTTCTTTTGATGGACGTTCGCACAGCATTAGGTTTCTTATATGTACTTAACCATATTTTGGAGAAAAAATTGTAGACAGAAACGAGCCAAATCTCCCTTTGAAGGGGTTACACGTTAATTAAATCTTACGCATGAACTGAATAAAAAGGCAAGCATGTTTATTTAAGAGTCTtgcataaaatatcattttactattttgttcttttctttactaagttgttttttctttcttttgttgattAGTTTTTTGTGGAATGGAAATTATGTTTCCTAacggtttttatttatttcatcagcTTCTTCTAATTCCGAAACATGCACattatcaattaattaaaaaaggttactgaacattgtataatatatcataaatacaaattaaaaaatctggCAGATTACGAGATGATCAAGGTGTAAGTGTCTTAAAATGaccatttattcatgttttatattgGCTCTAAAACCTTTTTGAATGAAGCTTAttctttttgtcattaaagCCAAACCACTGGATAAACTTAAATGTGTATTCAGCACCtggtaacaataataattataaaggTGAGTATCACTGTGCATAATGCTGAGTTAAAATCCTTATAGTCTTGTATTACACAACATACTGTACtatgaaattacaaataaagcCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172606 lncRNA downstream 85246 27706606 ~ 27707458 (-) True G116835
TU172605 lncRNA downstream 87770 27701126 ~ 27704934 (-) True G116834
TU172604 lncRNA downstream 115445 27675988 ~ 27677259 (-) True G116833
TU172603 lncRNA downstream 115845 27675988 ~ 27676859 (-) False G116833
TU172570 lncRNA downstream 180204 27612068 ~ 27612500 (-) True G116814
TU172656 lncRNA upstream 147798 27952568 ~ 27954707 (-) True G116865
TU172658 lncRNA upstream 155861 27960631 ~ 27961680 (-) True G116867
XM_043260926.1 mRNA downstream 98766 27690440 ~ 27693938 (-) False LOC122360376
XM_043260928.1 mRNA downstream 98864 27690440 ~ 27693840 (-) False LOC122360376
XM_043260927.1 mRNA downstream 99034 27690440 ~ 27693670 (-) True LOC122360376
XM_043260929.1 mRNA downstream 102584 27685267 ~ 27690120 (-) True LOC122360378
XM_043260930.1 mRNA downstream 102780 27685267 ~ 27689924 (-) False LOC122360378
XM_043261497.1 mRNA upstream 91958 27896728 ~ 27900760 (-) True tmem176l.4
XM_043261496.1 mRNA upstream 91958 27896728 ~ 27900757 (-) False tmem176l.4
XM_043261984.1 mRNA upstream 128304 27933074 ~ 27939751 (-) True mex3a
XM_043260134.1 mRNA upstream 161672 27966442 ~ 27971009 (-) False zmp:0000000881
XM_043260133.1 mRNA upstream 161672 27966442 ~ 27970007 (-) True zmp:0000000881
TU172608 other downstream 64760 27707716 ~ 27727944 (-) False G116836
TU172557 other downstream 165044 27623427 ~ 27627660 (-) False LOC122359885
TU172389 other downstream 212840 27520190 ~ 27579864 (-) True LOC122360079
TU172454 other downstream 431875 27358707 ~ 27360829 (-) True G116745
TU172373 other downstream 794345 26994167 ~ 26998359 (-) False LOC122360878
TU172659 other upstream 158718 27963488 ~ 27964958 (-) True G116868

Expression Profile