RNA id: TU172656


Basic Information

Item Value
RNA id TU172656
length 546
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G116865
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27952568 ~ 27954707 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGTTCAGAAAGAGAGTCGCAAAGTGTACAGCACTGAAGATCAGCAAAGAATATGGCAACAAGATCCTGTAATAAATGTGGGTTGAAGAAAAACTACCATGGATCATTACCGTATAAATGCAAGTGTGACGATGAAGAAGAGCACTTTCCTTCTCTGTAACAGCGGCGTCCAGGGATGGACCGTGCCGACAGATGGGACAGTGACTCGACGGCACTACGACGCTCAGAGTGGCACGAAGACAATGCAACGTGTAGTCATGAGGGACGGCAGATTTGCTGAAGCAGAGGAAAtcgtttataaatataattaaaagccacttaaaaaagattttaaaaatgtatgcgtGTCATGTTTTGTCTTCAAATACAGAATGCAACCAATTATGATGATTTTAATTAGACCACCATGCTGTCTATTAACTTTCTCTTACTTTACTTGTGCATTTTCAGTGGTTTCTCTAAGTTGAAATCCATAATGTGTTAACATTTTGCCATTAAATCTGAAATTTAACTTTGCTCTAATTCATACgaattgaataaaata

Function

GO: NA

KEGG:

id description
ko03060 Protein export
ko03070 Bacterial secretion system
ko02024 Quorum sensing

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172606 lncRNA downstream 245110 27706606 ~ 27707458 (-) True G116835
TU172605 lncRNA downstream 247634 27701126 ~ 27704934 (-) True G116834
TU172604 lncRNA downstream 275309 27675988 ~ 27677259 (-) True G116833
TU172603 lncRNA downstream 275709 27675988 ~ 27676859 (-) False G116833
TU172570 lncRNA downstream 340068 27612068 ~ 27612500 (-) True G116814
TU172658 lncRNA upstream 5924 27960631 ~ 27961680 (-) True G116867
XM_043261984.1 mRNA downstream 12817 27933074 ~ 27939751 (-) True mex3a
XM_043261497.1 mRNA downstream 51808 27896728 ~ 27900760 (-) True tmem176l.4
XM_043261496.1 mRNA downstream 51811 27896728 ~ 27900757 (-) False tmem176l.4
XM_043260926.1 mRNA downstream 258630 27690440 ~ 27693938 (-) False LOC122360376
XM_043260928.1 mRNA downstream 258728 27690440 ~ 27693840 (-) False LOC122360376
XM_043260134.1 mRNA upstream 11735 27966442 ~ 27971009 (-) False zmp:0000000881
XM_043260133.1 mRNA upstream 11735 27966442 ~ 27970007 (-) True zmp:0000000881
XM_043261721.1 mRNA upstream 136178 28090885 ~ 28127371 (-) True LOC122360891
TU172609 other downstream 147798 27792704 ~ 27804770 (-) True G116836
TU172608 other downstream 224624 27707716 ~ 27727944 (-) False G116836
TU172557 other downstream 324908 27623427 ~ 27627660 (-) False LOC122359885
TU172389 other downstream 372704 27520190 ~ 27579864 (-) True LOC122360079
TU172454 other downstream 591739 27358707 ~ 27360829 (-) True G116745
TU172659 other upstream 8781 27963488 ~ 27964958 (-) True G116868

Expression Profile