RNA id: XM_043260018.1


Basic Information

Item Value
RNA id XM_043260018.1
length 1650
RNA type mRNA
GC content 0.45
exon number 5
gene id rrp15
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5173650 ~ 5176812 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacactctctctaaaCTAAAGAGGCGCGGAACCTTTCGCGAGCGCCTCCTGTTTCACACGGACTGTTTAGGAAGGACTCGTAAATATCATTAAAGATGGCGACGCTCGCGAAGAAGCCACATGTCGTTGTCGAAGAAGGAGATGAGGAGGAGTTTGGAGTTTCTGATGACAGCCTCAGTAATGATGGAGAGGATGGAGAGAGTGGAGCAGGAAGTGACCAGGAGCGGTCTGATGTGGAAAGTGACGTAGAAGACAGCGGCGACGAGAATAGAGAGAGTGAAGAAGAACAGAATGGAGATGCAGCGGAAAATCCCAACGCCGGCTGGGCTGAGGCCATGGCCAAAATCCTGGGGAAGAAAACTCCGGACAGCAAACCCAGCATCCTCCTGAAGAACAAAGAGCTGGACAAGATCAAAGAGAAGCTGAAGAAAGAGCGtctggagaaaaagaaacagATCGATAAGAAACGAGCGTGGGAGAACATGTGTCGAGAGAAGCCTAACGTGGTTCAAGACCGAGAGAACGAGAGGAACCTGCAGAGAATTGCTACCAGAGGTGTGGTGCAGTTGTTCAACGCTGTGAAGAAACATCAGAAGGACGTGGATGAGAGGATAAAGGAAGTTGGGGgttcagagagaaaaaagtCCAAAATTCTGTCCTCCGTGACTAAGAAGGACTTCATTGATGTCCTGAGAGGAGCAGACGTGGCTCACAAAGCGGCCATCAAAAAAGAGAAAGTGCAGCCTGTAGAAGTGAAGGCGGAGAATTCATCTTGGAGCGTGTTGAGGGATGATTTCATGATGGGCACGTCCATGAAGGACTGGGATAAGGAGAGCGACGAAGAGCGCGGTGGAGGAAAAGTGGGAAGAGAAGACAACCTCGAGCCCGCTGAAGACTACAGCAGCGAATCAGACTGATCCATCGATACTGCACGCGTGCGTCATCTAGTGCACACTTCCAAGTGTTCTTACAGAGACCctgcacagagagagaagaatgAGCTTCACCTGATCGTGGGAGAGACACTTATGTTGCTCTGAGCTCCATGTTGGTGTTCTAGTATTTTTGGAGGGCATCTAGCCGAACCTCTTTTTCTGTATATAGATGtgtattttgctaaataaatgtttcatgcatcttgatttaagaatcgTAAAATActtgggaattttttttttgcagttcagGTATTCATTCAGTGCACATTTTCATGAATGCATTAATTTGTAGGGTTTTTAGGGGccatatttacatgcatatttatttgaacGGAGCcgtttttaaatagtaatttttttttttttttttatgaaccaTCGCCACATTAGTAAGGCTGCTTTATGCAGACTGAAAGAAAGTGTTCATAActgcctttttttgttgttgttgttgttttctggGCACAAATCCATCTAAGAAGAGTTTCACAAGACTGCAGGTCAGTCAGTTTAACAGTTTTCATTCGATGACCTCTTGCTGCGAGCTGAAGTTCCTTCAAGGTTTCCAGGTTGGTCGGATGCATTGATAACACGCACATTCCCATCATCACGCTTTCTGAAAAATGAAAGGGATTGCTGTATAGACTGGAAGGATGCTGTAACCACCACAGCTGAGAAATAAACCCAAGTTATTCGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162380 lncRNA downstream 84346 5088901 ~ 5089304 (-) True G109887
TU162295 lncRNA downstream 308971 4864417 ~ 4864679 (-) True G109836
TU162271 lncRNA downstream 312619 4860248 ~ 4861031 (-) True G109825
TU162262 lncRNA downstream 315252 4855654 ~ 4858398 (-) True G109824
TU162254 lncRNA downstream 350964 4821555 ~ 4822686 (-) True G109820
TU162384 lncRNA upstream 519 5177331 ~ 5177535 (-) True G109891
TU162405 lncRNA upstream 13538 5190350 ~ 5190705 (-) True G109906
TU162406 lncRNA upstream 13969 5190781 ~ 5191350 (-) True G109907
XR_006252732.1 lncRNA upstream 21979 5198791 ~ 5207419 (-) True LOC122359853
TU162416 lncRNA upstream 70426 5247238 ~ 5321296 (-) True G109914
XM_043261461.1 mRNA downstream 3020 5138694 ~ 5170630 (-) True tgfb2
XM_043260153.1 mRNA downstream 78055 5090511 ~ 5095595 (-) True lyplal1
XM_043261416.1 mRNA downstream 126767 5027170 ~ 5046883 (-) False adcy3a
XM_043261415.1 mRNA downstream 126769 5027170 ~ 5046881 (-) True adcy3a
XM_043260992.1 mRNA downstream 148326 5012577 ~ 5025324 (-) True wdr26a
XM_043260762.1 mRNA upstream 55399 5232211 ~ 5245558 (-) False vegfaa
XM_043260760.1 mRNA upstream 55399 5232211 ~ 5245434 (-) False vegfaa
XM_043260763.1 mRNA upstream 55399 5232211 ~ 5245397 (-) False vegfaa
XM_043260761.1 mRNA upstream 59091 5235903 ~ 5245461 (-) False vegfaa
XM_043261275.1 mRNA upstream 179175 5355987 ~ 5360418 (-) True ppp1r8b
TU162095 other downstream 1078146 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 2043671 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 4290898 882459 ~ 882752 (-) True G109287
TU161498 other downstream 4540753 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 4878665 294867 ~ 294985 (-) True LOC122361256
XR_006252797.1 other upstream 55399 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 58834 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 182698 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 640252 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 767409 5944221 ~ 5948789 (-) False LOC122359839

Expression Profile