RNA id: XM_043260021.1


Basic Information

Item Value
RNA id XM_043260021.1
length 3942
RNA type mRNA
GC content 0.47
exon number 12
gene id trim46a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15151744 ~ 15163625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCACAACATCCATCGACTACATGATGGCTCAAGATCCGTCAGAACAGACCACAGCAAGCACTGTTGGAAAACCCCTAAATCAACATGGACTGGGTTAAATCGGACCtatcatatatattatacaccaataatataattataacttAAAGGTTCGTCTTATAGCCGTCAATTTCAGTCGCAGGTACAACCATATCGGTTTATCTCGCGGTGTCCTGATAGTATTAAGCTGCTAGTCGTGTTTAATGATTCTATAAAGAGAAAAGAGCTCTCGATAATAGcgttatttcatttaatatcaatttaaccACCGGTATAGAACAGCAATGGCAGACGCGGAGTTGCAAACCTTTACATCCATAATGGACGCTCTCGTGCGCATCAGCTCCAACATGAAGAGCATAGAGCGAGAGCTGCACTGTCCAGTGTGTGAGGAGATGGTGAAGCAGCCGATCGTGTTGCCTTGTATGCACagcgtgtgtgtgctgtgtgcgGCAGAAGTCTTAGTTCAGAGAGGATACCCTCCACCCGAACTCCCCCCAGAACCCAACACTCCCAACTCAAGCCCCATCACCCGCTCTCCCCGACAGACACGCCGGCCTCCCCCCAAAACAGACCGTCTAGACCGGGTGATCAGAACAGTGTGCGGAACACATCCAGGACGCAGGCGTAAAGACACCCCTCCTGTGATCATGTTGTTCCCCTGTCCCACCTGCGGAAAAGATGTGGAGCTGGGAGAGAGAGGGCTTGCAGACTGTCTGAGAAACCTCACGCTGGAGCGCATAGTGGagagGTACAGGCACACCGTGAGTCTCGGCAGCATGGCAGTCATGTGTCAGTTCTGCAAACCTCCTCAGGCTCTGGAGGCCTCCAAAGGCTGCGCTGACTGCAGGTCTAACTTCTGTAACGAATGCTTCAAGCTGTACCACCCCTGGGGCACGCCACGAGCCCAACACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTATTAGTGTGTGTGGAACACGAGCAGGAGAGGTTGCAGTTTTATTGCAGGTCATGTCAGCGTTTGTTATGCGCACTTTGTAAACTCCGTCGAGCCCACAGCGGACACAAAATCATGCCTATTGCTCTGGCTTACCAAACGCTAAAGGAGAAGATCACCAAGGAGATGAACTACATCTTGGCCAATCAGGAGTCTGTACAGGCACAGATCACCCAAGTCGAGAGCGGCATTGCTCAGACTGAGGTGAACAGCGCAGTGGCTAAGGAGCAGCTGAATCATTGTGTGAGTGAACTGCGCGGTGTGCTGGCGGAGCGTCAGGGGGCCCTGGCCATGTTTTTGGAGGGGGCTCGTGCACAGCGAGCAGGGGCTTTGAACACACAGCTCTCTGAAAAACAGAGTCTTTTGGAAAACGCAGGGCTGCTCACATACACTCAAGAGCTGCTTAAGGAAACCGACCAGTCGTGCTTTGTGCAGGCCGCCAGAGTCACGCACAACAGACTGGTAAAAGCAATAGAAAATCTACAGCATTTCTCTCTATCTGCTGATCCCTCGTTTCGACACTTTCAGATGGACGTATCCAGAGAACTCAAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAAAAGACCTTGGCCTATGACCAGCTGTATTTGTGCTGGCGCCTCCCACAGGACTCCGCCCCCGCTTGGCATTACTCAGTGGAGTATCAGAGGAAAGTGGGCGGTGCTGGAGCATTATGGGGCAGAGTCTTGTCTGAAGGAAGCTCAGGAAGTAGTGGCACGCACTGCTCATGGCAGCGTCTGGATGATGTGGGCGGGACCAGTGCAGTGATTGACAAGCTAGAGATGGACAGCGTGTATGTCCTGAGAGTTCGAGGCTGTAATAAGGCAGGCTTTGGAGAGTACAGTGAGGAGGTGTATCTACACACACCTCCTGCACCAGTGTTGTCGTTCTGCCTGGATTCGCGCTGGGGCCTACATGCGGAGCGGGTGGCGCTGGGAAAAGGGCAAACGTACGCCCGGAGTGTTCCTGGAATGACTCTGTTGCAGGCTGCTGATCGGGCCCTCACCTCATGTCACCTCACCTCTGACCTCCTTGTGGCCGATGTTTCCATCACACAGGGacgacattactgggcatgctCAGTGGAGCCTGGATCCTACCTGGTTAAGGTGGGAGTAGGTATTGAAGCAAAACTACAAGAGTGGTTCCATCTTCCACAAGACATGGCAAGTCCACGATACGATCCAGACAGTGGTCATGACAGCGGTGCAGAGGATGCACAGGACTGTCCTCCTCCTTTCTGTTTCCTTACAATGGGCATGGGCAAGATCTTACTACCCAAGTGTGGGGCATCTAATACATCTACCGGCCCCCTCACCGCCCCCTTACCACCTCGCCTAGGACTGTGTCTGGACTTCGAGAAGGGGCGGCTCACTTTTTACGACGCACACTCCTTGAGAGTGCTGTGGGAGGGGACTGTTGATTGTTCTGCGCCTGTTTGCCCAGCGTTCTGTTTCATTGGTGGAGGTGCTCTGCAGCTGCAAGAGCTAATAGCCAACCGCAGCACAGAGCAGAACCCACCAAGAAGAGTGACCATCCAAACACGAGTCACCGACGCCGGCCGCTAAACCGCCTGGTCGCTTTAAAACTAGTCAAATGAGCACCTTTAAGCAAATCTTCTTTTATCGTTTTTTATCGACTTTGTTTACCTGCTTATTTCGTAGCTAATGATGCAatgaatgattatattttatattaagattcatttaatttcaaaggATAGACAATAAAACGTGGTTATGGATGCTAACAACATGTAGCATGCTAACAACATCTAggtcaatattaaataatgaggaattgttcttttttatggccacaaaatgtaaaaaatgaaatcaggTATGATTCAGGTCCACTCATAACACCTTCATTTTGAACATTCTTATGAAAGCAAATGATTCCTCGTTATTTACAAACTCGTTCTCCAGCATTGTTAGCATGCGAACCGCCTAATAAGGGTGTGCTAATAGTTAGTAAACAAACTGATTTGTTCATTAACATTGTATGTGCTCTTTACAGGAATGTATCAATGCCTTGAAATGTGATCAAGTTGCAATTCAAATCCATAGAGACAGTTCACGGCTGTCTTGTTTATCAGTTTCATGTTTCTAAGTAGTTCCCAATGTCCTTGAATTGTCTTGCTACTATGAGGCTCAACCAAGATGCTAAACATTTGGTTGGACATGTTGTATTGGTGTCAGTACACGTCCTGTGCATAGAGACCTTGTCTGTTTGGTTTGTTTGGGCCAAAACAGGGCTGATGGATGCCTTCAGCAAGCGAAACTAAAAGAACAACGGTGTAATGAAAAGAACCTGCTTTTGTGAGATCTCTACAGGTGCCTGCTCTTGTGTTACACAACCCGACTCTCCCATTTGAATGTcctataaaataacaatgtttgACACAcctcatactttttttttcataatcatGACGGTCATTGTcatgtcttttgttttctttttgcaaaatgGGTACGGTGACAACAATTTAGCGGGTTAAATTTAATTGCAGAAATGGATGCTGCTTATGACCGTGCAACTGTCAGTCATTAGAGTGTGTGCTGTTGAAAGGAAATGTTTGAATTGTATACTGAatgttgtatttattgtgtatgtgtgtgtgtgtgtgagtgagagagtgtgataTGTTATTGCAATAAAGACAGTTGCTAAAAGCTCTAGTTTTGGCCATGTTTTCTGCTATTTGGATGCATTGTTGCAGATTCAGGTCTCGTGTGAATTTATATTGATGTTGAGGATATTATGTAGCATTTCTTAAACATGCTGATCCTTTGAAAATTggcaaaatgtttgtaaatgacACTAATGTCGGAAGTGAAATAAAGCATCAACGTTT

Function

GO: NA

KEGG:

id description
K12022 TRIM46; tripartite motif-containing protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166926 lncRNA downstream 162813 14970605 ~ 14988931 (-) False si:dkey-246i14.3
TU166915 lncRNA downstream 204360 14946595 ~ 14947384 (-) True G113039
TU166910 lncRNA downstream 246837 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA downstream 246837 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166909 lncRNA downstream 259349 14892040 ~ 14892395 (-) True G113034
TU166979 lncRNA upstream 1372 15164997 ~ 15165440 (-) True G113090
TU166987 lncRNA upstream 4748 15168373 ~ 15170070 (-) True G113092
TU166957 lncRNA upstream 21513 15185138 ~ 15186435 (-) True G113073
TU166956 lncRNA upstream 21626 15185251 ~ 15197354 (-) False G113073
TU167012 lncRNA upstream 138249 15301874 ~ 15306535 (-) True rps27.2
XM_043260338.1 mRNA downstream 1676 15147024 ~ 15150068 (-) True si:dkey-247k7.2
XM_043261164.1 mRNA downstream 136282 14970541 ~ 15015462 (-) True si:dkey-246i14.3
XM_043262068.1 mRNA downstream 194509 14927037 ~ 14957235 (-) False shc1
XM_043260481.1 mRNA upstream 138549 15302174 ~ 15306611 (-) False rps27.2
XM_043261602.1 mRNA upstream 169033 15332658 ~ 15340225 (-) True osgin2
XM_043261692.1 mRNA upstream 178706 15342331 ~ 15342771 (-) True LOC122360842
XM_043261448.1 mRNA upstream 192009 15355634 ~ 15362140 (-) True LOC122360653
XM_043261447.1 mRNA upstream 201563 15365188 ~ 15375304 (-) False LOC122360651
XR_006252733.1 other downstream 238098 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 850125 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1467835 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3739967 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3865312 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 304855 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 304855 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 304855 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 329196 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 653354 15816979 ~ 15819086 (-) True G113203

Expression Profile