RNA id: XM_043260033.1


Basic Information

Item Value
RNA id XM_043260033.1
length 2395
RNA type mRNA
GC content 0.58
exon number 18
gene id tars2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6248919 ~ 6261997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGGACGCTGGTGACGCACGCCTGGCTTCGCTTCTCATTGGTTGTTTCTCACGCAGAGCCCGCCCTCCATCGAATTGTTCGGCGAATCGGGTTTCTGTCTCTGTGACGATGTAACGGTTCCGGTAAAATGGCGGCCCGCTAAGAGAGGGCGACGTTTGCTGTTTGGAGGAGAAATAATGGAGCCGTAGTTGAAGTGTGTGTGGTGTAAAATGGTGGTAGTCGGGTTCTGGAGCTGGCCCGTCTGTCAGGCGGCAGTGAGAGCAGCGTTGCGCGGAAGGAGACGCTATGGGAAGctTCATCCGTCCGGCAGTCAGACCGAACGCTTGCGGATCTTCCAGTCTCTCTGTGACCGGCGTGTGACTGGAGCTGATGAGGACCTCGCGGCGTCGGGACAGGATCTCACCATCCGATTGGCTGACGGCCGAACGGTCAAAGGGTCAGCCGGTGTGACCTCACCGCTACAGATCGCCAGGAGTGAACGTGTTAAAGGTGCGCTGCTGGGCAGAGTGAACGGAGGTCTGTGGGACCTGGGGCGCCCTCTTCTGGAGGACTGTGAACTGCATCTGCTGGGCTTTGACTCGCTGGAGGGCAGGCAGgCGGTGTGGCGGACCGGAGCGTGTGTGTTAGCGAGCGTGATGGAGAATCTCTTCAGCGCTCGTGTGTGTCGAGAGGGGGTCTCTGACGCGGGCCTCTACTGTGATTATCGGCTCCAAAACAACGCTCCGTCTCTGTCGGACGTGGAGCGGAGCTGTAAGCAGATGGCAGCTGGGAAGACTCCCATCGTCAAGCTCGAGGTCACGCTACAGGACCTGAAAGAGATCTTCCAGgatgaTGCTGTCAGGCTGCAGCTGGCTGAAGAGCAGATGACGGGGAACACACTCAGTGTGTACAGgTGTGGAGACACTGTGGGGGTGTGTTCAGGTGTTCTTCTCCCACACACAGGTTTCCTGAAGGCCTTTAACATGCTGCAGGTGTCTTCTGTCACTCTATCCGGTTCAACAGAGGAGTCAGGCATCCTCAGGATGATCGGCACGGCGTTTCCCGGAGAGAAGGAGCGAGAGGAATGggagagagagcaggaggagGCCAGAAAGAGAGACCACAGGAGAATGGGAAAGGAGCAGGAGCTCTTCTTCTTTCACGATGTCAGTCCCGGCAGCTGCTTCTTCTTGCCTAAAGGAGCTCATATATACAACACGCTCACCGACTTCATAAAGGGTGAGTACAGGAGGCGGGGCTTCAGCGAGGTTGTGACCCCGACGCTGTACAGCACGTCTCTGTGGAAGCGCTCGGGTCACTGGGAGCACTACAGCGAGAACATGTTCACGGTGACCTGTGAGCCGCACACCTTCGCTCTCAAGCCCATGAACTGCCCCGCACACTGCGTGATGTTCGAGCAGCGGCCCCGTTCGTGGCGAGAGCTCCCCATCCGCTGGGCGGACTTCGGCGCGCTGCACCGCAACGAACACTCGGGAGCGCTGGGCGGCCTGACCCGAGTCCGCCGCTTCTGCCAGGACGACGCACACATCTTCTGCGCGCCTGAACAGCTGGAGGAGGAGATCACGGCGTGTTTGGACTTCTTGAGGAGCGTGTACCGTGTCTTCGGGTTCTCCTTTCACTGTCTGCTCTCCACGCGGCCCGAGCACTTTCTGGGAGAGCCCGCCCTCTGGGACGCTGCAGAGCAGCAGTTAGAGAGCAGTCTCAAGCTGTTTGAGGAGCACTGGGAGCTGAATCCCGGAGACGGAGCGTTTTACGGACCCAAGATAGACGTCCAGATCCGTGACGCTCTCGGCCGACAGCACCAGTGTGCCACGATCCAGCTGGACTTCCAGCTGCCCATCAGGTTCAACCTGCAGTACGTCGGggCTGATGGACAGATGCACAGGCCGATCATGATCCACCGGGCAGTGCTGGGGTCCCTGGAGAGGATGATCGCTATCCTGGCCGAAAACTTTGGAGGGAAAtgGCCTTTCTGGCTGTCTCCGGCGCAGGTGATGGTGCTGCCTGTGGGGGTCAGCAGCGAGGCGTACGGGCGGGAGGTGGTCTGCAGGCTGAGGGAAGCTGGCTTCGTGGCTGATATCGACAATGATGACGGAAAcaccttaaaaaagaaaatcctctCCGCGCAGCTAGAGCGCTACAATTACATGTTCGTGGTGGGAGAGAAGGAGTGCGTGAGCGGCACGGTGAGCGTGAGGACGAGGACGGGGAAGCAGCTCGGACAGAAATCCCTGCAGGAAGTGATGCGCTCGCTGAACGAGCTCAGACAGACACGCAGCAATTTGGAGGAGTTTTAGGACCACCACCACGAGATAAACACACTGACTCCTTCATTTCCTCTCAGCCTGATGTTATTTCGtgtataataacataataaataacttttactaTTCA

Function

GO: NA

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162914 lncRNA downstream 40251 6139394 ~ 6208668 (-) True G110227
TU162910 lncRNA downstream 41114 6137107 ~ 6207805 (-) True G110224
TU162909 lncRNA downstream 45030 6201389 ~ 6203889 (-) True G110223
TU162862 lncRNA downstream 54285 6191010 ~ 6194634 (-) True G110199
TU162871 lncRNA downstream 64786 6183025 ~ 6184133 (-) False LOC122359839
TU162877 lncRNA upstream 18031 6280028 ~ 6280291 (-) False LOC122359836
XR_006252833.1 lncRNA upstream 423503 6685500 ~ 6688903 (-) True LOC122360716
TU163020 lncRNA upstream 827729 7089726 ~ 7091063 (-) True G110307
TU163030 lncRNA upstream 932541 7194538 ~ 7195316 (-) True G110315
XR_006252790.1 lncRNA upstream 1032185 7294182 ~ 7296238 (-) True LOC122360226
XM_043260030.1 mRNA downstream 300121 5903040 ~ 5948798 (-) True LOC122359839
XM_043261140.1 mRNA downstream 348702 5877048 ~ 5900217 (-) False celf3b
XM_043261139.1 mRNA downstream 348703 5877049 ~ 5900216 (-) True celf3b
XM_043261141.1 mRNA downstream 348706 5877049 ~ 5900213 (-) False celf3b
XM_043261145.1 mRNA downstream 348709 5877049 ~ 5900210 (-) False celf3b
XM_043260029.1 mRNA upstream 1507 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 1507 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 17712 6279709 ~ 6339496 (-) True LOC122359836
XM_043260113.1 mRNA upstream 299853 6561850 ~ 6566189 (-) False irx1a
XM_043260112.1 mRNA upstream 299853 6561850 ~ 6566179 (-) True irx1a
TU162893 other downstream 148992 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 214142 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 300130 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 430557 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 889240 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 819965 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 933493 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1348632 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1348837 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1566823 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile