RNA id: XM_043260038.1


Basic Information

Item Value
RNA id XM_043260038.1
length 2071
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC122359849
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1496586 ~ 1510434 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACACAGCACTACCTAAAAGCAGGAAGTAGCTGCGTTAGTGGATCCTCCATCCAAACCACATGCAGccgaaacagaaaaacaaagccTACAAAATTACATTTCGGCCAGATGTGGATTTTCTGATGCACTGCTGAGGCGAGAAGCTGAAACTAGTCATCTACATATCGCGTGGACGCGTTTGGGAAAACAAGAGCATGGGGCAGCATCTTGGGAAACGTGAGCCACATACTGTTCCTAAGggGGCATCAACTGTATCTGAACCCGTCCCCACAGACTCACAAGATGAGGTATTTGGACTGGGGGAGGCGGACCTCAACCAGAACAATGGGTGCTCCAGCAAGAGTCCAGTGGTGACTGACTCCATGAACGCTGCAGTAGATCAGAGCAGCTGGAGCCATCTGAGCTCAGACGACCCTAATGCCTCAGGGCCCCGGCCCCACTTGATCCGCCTCTTTTCTCGAGATGCCCCAGGTCGCGAGGACAACACCTTCAAAGACCGCCCCTCGGAGTCTGATGAGCTGCAGACCATCCATGAGCACAGCGGAGCTGGCTCAGAGTGCGGTTCCGAGTGTGCAGAGTAGGACCTAAAGTAGATTTCCTCTTTGCCCTCTCTTTCCTCACTCCTACTTTGGAAACAAACACACCGCTGCAGAGATTAAAGCTAACACTCAGCATGGCATCTGCAAGCTCTTCGCAGTCAACATTCAGACTGGGCCGCAGTAAGAAGAATCCTACTGGTTATGGATCAGATTGGAAAGTTCtttggaggggaaaaaaagaagaagggaAAGGTGAGGATTGAGCAGGCATTCAGAGTTCTCCACATGAGCCTTTACTACTGTTCTATTTGCGTGAATTTATCTTGACCTGCAATTATTGCTTGATTCCGAGATCACCACCAGTAAATGAGttgcatttgatttgatttatttttttaaatggacttTTATCTCTTAAGTTTATTACACGTTGCTGTCATATAGTATCCAGTATTGCATAAAGCTGCAATTTGTTATAGGATTCTACTGTGATTCAGGGATTCAGCATACAGTGTGATGTTTATAAACATCACTTTTAGCTTTTATATAATGtgcaaatgtatttgaaatgccTGTGTAacaaaattaagtgtttttatgacttttcacTGACAGCAACTGCAACGTTGAAAAGTTCTGTAGTAACCATAAAAGATGGTGCATATAGCATATTGTACAGTGAGTGGTACTGTCTCAACCAGGATGTTTATGTCGGCGAAGAGAATTTTCACATATCTGACACTTTCTTATACAGTATGTgattgataaatattttatattttataaccaTTTTCAAATCCACTTATCGTATAACATCATGGTGTTAAGGGAGCACCTCAGGGTTTTTCACGGTACAGATGGAGGCCATTACTGACCAGTTTGGTTTCTAAAACGAACTTGCATCGTTTtggaaattatatttaacatttgttatGCTTGTGAAATTATGCAATTTCTAGAGCCTTAACTTTTAAGAAAGGAGggagataaatatttttttcttctaaaataatataaagatatttaagcGTTTAGGTGACAAACACCAAAGTTGGGAAACTCTTTGCTTTGTGGGGAAAATGTGAAATGAGATCGTGATGATGTGAGTTTATATTTGTGACCTTATTTTGAAAGTGCCATATGATGGTTAAAATGTAACGTTGCGGAATTACTGACTAGTTTTAATACAGCTAAATTTTTTTGTGGGTAAACATAATGTGACAAAGAGATTCGGATGTCATAGTTCCAGTTGTATAATAGTTTTGTCCCAAACCTACATGTTTGCTGCTTCAACCAGATTTCTCAAACAAGCCTCAGGTTAACTCACCTCTCTAATGTAACAATGTGATCTTTTAAGTGTTAATGCCTCACTAGTAACCCCTGTGTCCCAACTAGATTGTGTCCCATTTGTAACACTTTGTAACAACATCAGCTTGTGTAACCTCCATATTCTGGAACAAATATGTTATTTAGCCTGATCCTGTCCTGAGCTTTTTGACCTTTGCTTGATTAAAATCTGTGTAACACCAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0043209 myelin sheath cellular_component
GO:0019911 structural constituent of myelin sheath molecular_function

KEGG:

id description
K17269 MBP; myelin basic protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161547 lncRNA downstream 170652 1325620 ~ 1325934 (-) True G109320
TU161543 lncRNA downstream 215331 1280870 ~ 1281255 (-) True G109316
TU161535 lncRNA downstream 300757 1113743 ~ 1195829 (-) False G109308
TU161533 lncRNA downstream 374881 1113743 ~ 1121705 (-) True G109308
TU161515 lncRNA downstream 530512 965738 ~ 966074 (-) True G109292
TU161698 lncRNA upstream 10849 1521283 ~ 1521485 (-) True G109430
TU161692 lncRNA upstream 17659 1528093 ~ 1542296 (-) True G109425
TU161707 lncRNA upstream 125982 1636416 ~ 1636997 (-) True G109439
TU161708 lncRNA upstream 130343 1640777 ~ 1641312 (-) True G109440
TU161709 lncRNA upstream 132196 1642630 ~ 1643043 (-) True G109441
XM_043261994.1 mRNA downstream 204273 1282311 ~ 1292313 (-) True LOC122361052
XM_043260624.1 mRNA upstream 34853 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 34853 1545287 ~ 1549823 (-) True pmvk
XM_043260684.1 mRNA upstream 137933 1648367 ~ 1654527 (-) False si:ch73-341k19.1
XM_043260687.1 mRNA upstream 137933 1648367 ~ 1654527 (-) True si:ch73-341k19.1
XM_043260686.1 mRNA upstream 137933 1648367 ~ 1654515 (-) False si:ch73-341k19.1
TU161510 other downstream 613834 882459 ~ 882752 (-) True G109287
TU161498 other downstream 863689 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1201601 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1218112 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1218507 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1617627 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2584323 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3721777 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3725212 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3849076 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile