RNA id: XM_043260066.1


Basic Information

Item Value
RNA id XM_043260066.1
length 3732
RNA type mRNA
GC content 0.42
exon number 6
gene id faxcb
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23556775 ~ 23566844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgtttaataataattttatttgccTAGCTGCCCTGCGTGATGCGTCGTGACGTCACTCAGCTTCAGCACAGCAACAAAGGAGGATGCGGAGCCGCGCGCGGGAGCCGGATCTCgttaaaatgcttttctttcacTTCGCGAGCCCGACATAACACACAACCATGTAACATTTGTCCGTATTTACATGGATAAATGAAGTGGCGCAGGATTCGTTGGAGGAAGcggggggagagagagaatgtaCTGGGTCGCGGGTTTCGCCTCCTCCCGCTCGTTCGTGgttgatcttggccggaatcaGAGCCCGTCCTTCGGGTTGTGTGGCTCTGATGAGCGCCACTTATTTTATGGGTACATAGTAGCCGTCCCTGTGCAGGATTTCGGCGGGATCATGTCGGGATTGGTATCGGATTCCTGGTGGAGGAAGACGCTTTACATCACCGGAGGTGCCCTGCTGGCCGCGGCTGCGTATCTGCTGCACGAGCTGCTCTCCATCAGGAAAGAACAACAGTTGGATTCTAAAGACGCCATCATCCTTCACCAGTTCTCCAGGCCAAAAAACGGGGTGCCAAGCCTTTCACCTTTCTGCCTGAAGATGGAGACCTATCTGCGGATGGTTGATCTGCCCTATCAAAGTTACTTTGATGGGAGCCTCTCCTCCCAGGGCAAGATGCCTTGGATCGAGTATAATTATGAGCAGGTGTGCGGAACTGAATTTATAATTGACTTTCTGGAGGAGAAACTTGGTGTGAGTCTAAACAAGAGTCTGAGCGCTCAGGAGCAGGCGGTAGCGCGGGCCATCACCACCATGGTGGAGGAACACTTGTACTGGACCATTGCATACTGTCAGTGGGTGGATAACGTTCAGGAGACCCAAAGGATGCTGGACCTTCCCGGGCCCCTCAGTGATCTGCTGAAATGGATCCTGTGTCAGCTGACCGGGGGCATTGTAAAGCGAGAGATGTACTGTCACGGCATTGGCTGCTTCACTAAAGAGGAAGTTTACACCCTCATGGAGAAGGACATGCGCACGCTGGCCACACTGTTAGGGGATAAGAAGTACATCATGGGTCCAAAGCTGTCCAGTGTGGATGCCACAGTGTTCGGTCACCTTGCACAAGCCATGTGGACGCTGCCTGGGACACGGCCTGAGCAGCTCATTAAAGGAGAACTGATTAACCTCGCCATGTACTGTGAGCGCATAAGGAGGAAGTTCTGGCCCGAGTGGTTTGTGGACTTAGAGGACTTCTGTTATGACAGTGACAACGACACTAGCAGCGGGACACCCACCTGCATGCTGGACCTTGGTCTCTTTTCCAGGACAGACACTTTAGAGGAAAGTGATCTAAGCCTCCCGTCACACAGTAATACACACTCGCAAGACTCGGACCGCTCCGTACACTCGCTCTCAGACTCTGACATTGAAGCAGATGGCTCGGATGTGGAGCAGCAGGTCAAGGGTAAAATCTAATAGAGGCTGTTTTTTATCTGGTGTAAGATAGTTTTTTTTGGGTTGCATTATGACTCAAGAACTCAAAGTGATATTTCTTGCCTGGATGAATAACACTTTGATGAACAAAATGCGTGTACACAATGTGACATCAGTGACATGTACACCTCCAGATTTACAAAATCATCCATTCTTATCATTGTAAAAAACATTACGCCTCCATCCATAGTTTCATTACGCTTTCGAATTAGCTTTCATTTCCAGGTAAcaaacatttcatgttttttcagaCCGCTCAATATGTGTCTTTTCTCCAGCTTCAATCAACGTTTAATTAACATGTGCTCCAGAACAGAATCATGTAGCAAAATACTAGCTTGCATGATTTTAGGATGTTGCGGTTTAACGTTTCGTGCCAACTGAAACTAAATCTGTGTGAATTCCTCCCTCCTGTTCAGACCTAATAATTCCTTCCCGAGATCAGCTAAAGTACACAAAATAGAATTGATGGGGATGGATAAAAGGATTTATGAAGCATTTAATCCCGGGTTctgcataaaataacaaaacgaGAATCCAATCTTCACAAAAATTTAGgctaatacaataaaaaacaaatcccTTTCTGTCGTTTTTATTTGTTAGGGCTCCAGTGTGTGTCATCAGTGTCAGACTCTTGATCGGTCTGAATGGTGCTTAATGCCTGTGTGCCTGACTGCAACCATTTGTACACGTGTGACAGTCTTTCCTCTCCATCCCCATGTGTCTCTTTCGGTTCGATTCTGTAATACAGACCGGTTTGGGTGTCACCACCAGAGGGCACTGTGACCATTCACATGCTGAGTGGGTCCTATGCAGCCTCTTGCTTGAGAGTCGCTTGAAGCTTCTGCCTTAAAAGaacgttttaaatattaataacaacagtGAACCTCTAGTGAACACTAAACGGTCAGCTTCGGTGGCGTAGGAGTCTgatcatgcatttgttttgttttttttatccatgtgtgtgatttgtgtaCCAAAGTGTAGTACGTTGAGCAGATTTGCCTTAGTTGAGGGAAAATTGTTGTGATTAACAGCCGCATGATGAATTGACCCTCTTTCTGTTAAATTTACTTGAAACCCAAGCCTGTActtaatgaatttatttcaatCCCTTGTAGTGTTTGATCTTTTATGCTGACTTCTGTCGTTTATTTGGCATATTGTTGCTTTGCACATTTTAGATTATTGAAAGACTTTGGACAATGTAAAGATACGCAGGACTTAAGACGGGGTCCATACAATCAGTGAGATATGTTATATGTGCGTGTGATATACAGTAGTTACCTGTAATACATCATTTACCTGcatgtgcgtttgtgtgtgcgtcTATATGTGTGAGCTGGTGTAAAGTTCACCAGTGAAAACCTCCTAGCAAATATTTATCCCCTGTATAGTATCGAGGCTAAAGTTAAGTACACATAAACCCAGTCTCGTATGAATTTTGTGttgatattaattaatttgcaacttattatttttgtttaaagtaatacaaattatttttcattgacTTGGGGAGATGGTCAGCTAAAAAGGGTCTATTcgaataattataaattatgaaaCTGTTCAAATTCTCattcaaaaacatgcatttaaattttacagtgtgatgtttgtttattaatagaCTTTTAGAGATGTATCTGTGTGTTGGGAACGTAGCTGGATTATGTTCTCATAAGATGTCAGTTTTGCTATAGATCTTATATTAGATCTTGAAGCCATATTAGAGAGTTAATTTCCTGTTTGTGGAAACAGAATGATGgatataagtataaaatataaatataatatatatatatatatatatatatatatatatatatatatatatgattctaTAAGATTCTGCCTAATCTGAATCAGCTATAAAATATTGTGCATAACTGAGACCCTCTCGTGAGTGTTTAGTTATCCTGAACTGAGTGGTTGTTTGACAATGATTGCTCTAAAACATCAATTAAAATAGCTGTGACAATTAAAACGTATGCATGaggtgtatgtttttttatgctctttgttATTAGTGAATTTAgtttaatgcttttgtttacctttttttttttttttttttttttgcttttattaagtATCGTGCAACACCTCTGGGTCGTCAAATTTTTACTAGAGAGGTCTTGGACTCTTTACTTTTTGTGTCACTCTGTTTGTAGGCTCCATTGCATTAGTTTAGTTTACCTCAGGCGATCACATTAAACACTGATTTATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 228882 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 367125 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 388835 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 478905 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 249053 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 250056 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 253675 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 253675 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 254008 23820852 ~ 23822288 (-) True G115914
XM_043261851.1 mRNA downstream 19953 23527088 ~ 23536822 (-) True fbxl4
XM_043261198.1 mRNA downstream 153145 23389423 ~ 23403630 (-) True mms22l
XM_043259987.1 mRNA downstream 187822 23367501 ~ 23368953 (-) True calhm6
XM_043259989.1 mRNA downstream 189402 23362337 ~ 23367373 (-) True calhm5.1
XM_043260514.1 mRNA downstream 195401 23358473 ~ 23361374 (-) True rwdd1
XM_043260068.1 mRNA upstream 214 23567058 ~ 23572317 (-) True coq3
XM_043260065.1 mRNA upstream 6127 23572971 ~ 23579881 (-) False pnisr
XM_043260063.1 mRNA upstream 6127 23572971 ~ 23579881 (-) False pnisr
XM_043260064.1 mRNA upstream 6127 23572971 ~ 23579766 (-) True pnisr
XM_043260939.1 mRNA upstream 16149 23582993 ~ 23609834 (-) True usp45
TU171080 other downstream 32393 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 622808 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1467721 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1588240 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1752971 21801475 ~ 21803804 (-) True G115149
XR_006252802.1 other upstream 21341 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 103054 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 759863 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2100975 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2812828 26379672 ~ 26384187 (-) True G116604

Expression Profile