RNA id: XM_043260113.1


Basic Information

Item Value
RNA id XM_043260113.1
length 2181
RNA type mRNA
GC content 0.55
exon number 3
gene id irx1a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6561850 ~ 6566189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCAAGAAAACAGTAAAGCCAgtgtttcatttgaataattcaattcagagcatcattttgttttgttttttttttaccaaacgCACGCAGTATTAgcaatcaagaaaaaaaaagaatacagttGTTTGATCGTCAATACCTGATGAAGATCAGAGTCATCGCGAGTGTCGCTTTAATTCTCCAGCGTTTATAAGAATTACGAGCCGTTCAAATAAGTTCCGCGTGCCTATCAGTTCATTTCCCCAGTGCTGGGCAGCTGTAAAATCGTGTAGACAGGTTGTCACACTACAGTGAATGGATTCTAATGctaaacatttaacatacaATCCTCCAAACAGTGCAAAAGTGGCCCTGGCCAATGCTCTAACCACATGCGCCAACGAGGAGGAGCCTGGGACGCCAATCAAAGCATCAACTTCAAATTGTATCTGAGAGATCAGCCCAGGACCTAGGGGCAGAGACATCAGTTGGAGCTCAATTGTTGATCTGATCACATCCGACGGACTTGCTGCAAAAGAGAAGCTGAGATTTAAAGACGAGCGTTTCCCATTCTCGCTCCGCGCGGCTCGAGAGAGACCAACTCTTCCGCTTCTCGCTTTGGTGGGCTACTCGCGCTTTTTCGCCTGGTTTTGGCTCGCGACGCGGCGAAGGAGATGTCTTTCCCGCAGCTGGGTTACCCGCAGTATTTAAGCGCCTCGCAGGCGGTGTACGGAGGCGAGCGGCCGGGGGTGCTGACTGCGTCGTCCCGCGGAGGGAGCGCGGAGATCGGGGGGAGCGCGTCGGCGGCGGCCGCTGCCGTGTCCTCGGTGCTGGGCATGTACCCCTACGCGCACAACTACAGCGCCTTTCTGCCTTACACCAGCGCCGATCTGGCTCTCTTCTCGCAGATGGGCTCTCAGTATGATCTCAAAGACAGCCCCGGCGTCCACCCCGCCAGCTTCGCCGCCCACACGAGCCCTGCCTTCTACCCCTACGGTCAGTTCCAGTACGGAGACCCGGCCAGGCCCAAGAACGCCACGCGGGAGAGCACCAGCACCCTGAAGGCCTGGCTCAACGAGCACCGGAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGAAGACTGAAGAAGGAGAACAAGGTGACGTGGGGCAGAAGCAAAGAGGACGAAGACGGGAACATTTTTGGCAGCGACAACGAGGGGGACGCCGAGAAGAACGAAGACGAGGAGGAAATAGATCTGGAGAGCATCGACATCGACAAGATCGACGACAACGACGGGGACCAGAGCAACGAGGAGGACGACGAGAAGCGCGGGGAGCTCGAGGCCTTCGAGAAAGCCAAGCCCAACGCCATTTCCGGCAGCAAAGAGCCGTCGGACGGaaacaacaacgacaacaaCACCAGGGTGCTGTCGCCGGGGCGCCAGGGAGGTTTTCAGGTTCCGGTCAGCAATAAGCCCAAAATATGGTCGCTGGCAGAAACCGCGACCAGCCCCGACAGCTCGCAGAAACCCACGTCACCCTCGGTTCCCGCCACTCACCCGGCCTTCCTGCCCAGCCACGGACTGTACACGTGCCAGATCGGGAAGTTCCACAACTGGACCAACGGGGCGTTCCTGGGGCAAAACTCGCTGCTGAACGTCCGGTCGTTCCTGGGCGTCAATCAGCATCACCACAGCCACCCGACCCActcccagcagcagcagcagcagcagcagcaggccTCGGCGGTGCTGGTCTCGTCGATGGCGGCCGTGAACACCGACAAGGCGCCCGAGGACCTCAGTCCCAAACACATAGCCCCAGAAACCAGCAGGAATCGACACAGAGGGTCCTCACAGCTCTCTCCTCCGCTTGATCAAGACATTTACCCCGCTAAAGGACTTATGGCACTCATAAAGGGACAGTGAGATGTGACTCGATTCAGCGTAGCGTTCAGTTTCTCTAAAACAAACGGCCGCTGGAGCTGTACATAATGACACCTGTGATCCCTCCCTTACCCTGGGACATTGGTAGGCTGATTTTGTCTTCATGTGTCGGTGTTTTCCTTTAAGGTGACCCACATTTGTAAATAGCGAGTTGACGGAGTTTGTTCAGATCATATATTTTGTctaataaactaaatgaaattata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162877 lncRNA downstream 281559 6280028 ~ 6280291 (-) False LOC122359836
TU162914 lncRNA downstream 353182 6139394 ~ 6208668 (-) True G110227
TU162910 lncRNA downstream 354045 6137107 ~ 6207805 (-) True G110224
TU162909 lncRNA downstream 357961 6201389 ~ 6203889 (-) True G110223
TU162862 lncRNA downstream 367216 6191010 ~ 6194634 (-) True G110199
XR_006252833.1 lncRNA upstream 119311 6685500 ~ 6688903 (-) True LOC122360716
TU163020 lncRNA upstream 523537 7089726 ~ 7091063 (-) True G110307
TU163030 lncRNA upstream 628349 7194538 ~ 7195316 (-) True G110315
XR_006252790.1 lncRNA upstream 727993 7294182 ~ 7296238 (-) True LOC122360226
TU163114 lncRNA upstream 764959 7331148 ~ 7385396 (-) False LOC122360224
XM_043260027.1 mRNA downstream 222354 6279709 ~ 6339496 (-) True LOC122359836
XM_043260029.1 mRNA downstream 282273 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA downstream 282275 6263504 ~ 6279575 (-) True rprd2b
XM_043260033.1 mRNA downstream 299853 6248919 ~ 6261997 (-) True tars2
XM_043260030.1 mRNA downstream 613052 5903040 ~ 5948798 (-) True LOC122359839
XM_043261656.1 mRNA upstream 84760 6650949 ~ 6690226 (-) True LOC122360792
XM_043260643.1 mRNA upstream 630902 7197091 ~ 7201319 (-) False LOC122360222
XM_043260642.1 mRNA upstream 822527 7388716 ~ 7392318 (-) True sox4b
XM_043261055.1 mRNA upstream 875709 7441898 ~ 7618596 (-) True cdkal1
XM_043261494.1 mRNA upstream 1262026 7828215 ~ 7830750 (-) True LOC122360680
TU162893 other downstream 461923 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 527073 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 613061 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 743488 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 1202171 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 515773 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 629301 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1044440 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1044645 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1262631 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile