RNA id: XM_043260127.1



Basic Information


Item Value
RNA id XM_043260127.1
length 1466
RNA type mRNA
GC content 0.43
exon number 4
gene id ccn4b
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18596956 ~ 18600264 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGCTTGGTGACAGATGGATGCGACTGCTGCAAGGCCTGTGCCAAGCAGGTGGGGGAGACATGTAATGAAAGAGATACCTGTGACTATCATAAAGGACTTTACTGTGACTACAGTGCTGACAAGCCGAGATGTTATGGGAACAGGCTGTGAGTATAATGGTGTGATTTACCGTAATGGCCAAAGCTTCCAGCCCAATTGCAAGTACCgttgtctgtgtgtgaatgGGGCGATTGGATGTGTGTCGCTCTGCACCGAGTCCCTGCCTCCCCGGGTCTGGTGTCAGTCACCCAAGCGAGTCAAGATCCCAGGCCAGTGTTGCGAGAAATGGATTTGCGAAGAGTCCCGTAAACCACGCAAGACCAACCCCAGACATGCTCCTGAGGAGGTGTCCCTCACCTCTAATGATATTTGgcataaaaactgcattaccCAGACCACCCCGTGGAGTCCTTGCTCAAAGACCTGTGGGCGGGGCATATCACAGCGCATCTCTAATGACAATGCTGGCTGTGTGATGGAGAAAGAGTCTCGACTGTGTAACCTCCGACCTTGTGAGGTGGACATCACCAAGCACTTTAGACCGGGTAAGAAATGCCTGAACATCTACCGTGAGCCAGAGTTCCAGAACTTCACCATCTCAGGCTGTGTCAGTAAGAAGGCGTATTGGCCTAAGTACTGTGGAGTCTGTACCGATGAGCGCTGCTGCATCCCATACAAGTCTAAGACCATCGAGGTGGAGTTTGTGTGTCCAAATGGATCAGTTTTTTTCTGGAAGTACATGTGGATCAACGCCTGCTTCTGCAACCTCTCCTGCAGGAATCCAAATGATATCTTTGCAGATCTTGAGCAATACTATGAGGCCAATGAGATTGTTAACTAATTCACAGAATGCCAGATGCAATCACTTTTTATGGCATCCTTAGGCTCACATTTGTAGGCTGTGCATCACACTTGACAGTAACAGGGATGCTGGAGAGCACAGAGAGTGCTGTTGATGAGAAATTTGGATTATTTATGAATGAACATCAGCACAGTTACTCACAGAGAATAACGATAGTTCAGACTGAAGGACTTTATGGTGTAAGAAGATTGCTAATGGATGGATGAGGGACAAAATCAGCaattaagaaaatgttaaatctaAGACTTCCTGTTCCGAATCTGTGAAGtccaaaaaactgtttttatattttgcaaacatgttttaaaaataccgCCTTCAACGAAAAAAGGAATTATCCTTAAACGAATGCACATtatcagtttttgaaaatatacGTTAGTTAAAATGGTGTTAAAGGACATTTTTCTACCTTTGTTATGTTACATATTCTGAAATACATATAAGAGAAGTGACGGTGATCTCCTTGATATTCACACTTTCATTTTGCCATGTTGATACTGTTCGTATTTAATTCTGGAAATatgcagaaatgtatattttttaataaaagacatttgctta

Function


GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU168638 lncRNA downstream 48017 18548188 ~ 18548939 (-) True G114231
XR_006252807.1 lncRNA downstream 52276 18528871 ~ 18544680 (-) True LOC122360486
TU168419 lncRNA downstream 221342 18373968 ~ 18375614 (-) True G114075
TU168395 lncRNA downstream 357687 18195515 ~ 18239269 (-) False lmna
TU168370 lncRNA downstream 401788 18164406 ~ 18195168 (-) False LOC122360777
XR_006252842.1 lncRNA upstream 88189 18687166 ~ 18688395 (-) True LOC122360941
TU168682 lncRNA upstream 140777 18739754 ~ 18740829 (-) True G114259
TU168713 lncRNA upstream 214243 18813220 ~ 18821088 (-) False rpz
TU168711 lncRNA upstream 214252 18813229 ~ 18821088 (-) False rpz
XR_006252755.1 lncRNA upstream 386426 18985403 ~ 18987922 (-) True LOC122360016
XM_043261486.1 mRNA downstream 7254 18566051 ~ 18589702 (-) False ptp4a3b
XM_043261485.1 mRNA downstream 7271 18566051 ~ 18589685 (-) True ptp4a3b
XM_043261483.1 mRNA downstream 19794 18566051 ~ 18577162 (-) False ptp4a3b
XM_043261116.1 mRNA downstream 31829 18559118 ~ 18565127 (-) False csnk2a1
XM_043261115.1 mRNA downstream 31833 18558731 ~ 18565123 (-) True csnk2a1
XM_043261418.1 mRNA upstream 2833 18601810 ~ 18632915 (-) True tg
XM_043261385.1 mRNA upstream 34261 18633238 ~ 18643289 (-) True phf20l1
XM_043261559.1 mRNA upstream 54755 18653732 ~ 18662490 (-) True LOC122360727
XM_043261587.1 mRNA upstream 70630 18669607 ~ 18671274 (-) True LOC122360747
XM_043261779.1 mRNA upstream 85596 18684573 ~ 18698407 (-) True LOC122360940
XR_006252779.1 other downstream 76669 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other downstream 76669 18492626 ~ 18520287 (-) False mroh1
XR_006252805.1 other downstream 229966 18357417 ~ 18366990 (-) False slc45a4b
unassigned_transcript_2159 other downstream 1606582 16990302 ~ 16990374 (-) True trnat-ugu_49
TU167506 other downstream 1914778 16680197 ~ 16682178 (-) False esrp1
TU168645 other upstream 50542 18649519 ~ 18650609 (-) True G114236
TU168660 other upstream 70704 18669681 ~ 18671245 (-) False LOC122360747
TU168665 other upstream 94935 18693912 ~ 18698316 (-) False LOC122360940
TU168666 other upstream 94935 18693912 ~ 18698316 (-) False LOC122360940
TU168710 other upstream 216239 18815216 ~ 18821088 (-) True rpz

Expression Profile


XM_043260127.1 Expression in all Baseline Samples

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XM_043260127.1 Expression in each Bioproject

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XM_043260127.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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