RNA id: XM_043260128.1


Basic Information

Item Value
RNA id XM_043260128.1
length 3335
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC122359907
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14908620 ~ 14913646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGGGGAGTAGATTCGTCTCAACAATGGGTGTGCATGTCTCCAGTTTCTCTTGCTTCTGGTGGAAATTTATACTGGTTTTATGTGTCTGCAATGTCGTTTTTACTATTATACATAACCGCTGCTTAACCATTGAGGAGCATCTCATCCGAGACATGCCCAAGACTCCAAAGTGCAACCATTATCCAGGAATGGGTCTATATGCCGACTGCAATATTATAGACCTGCGCACTGACCTGTCGGAGGTAGGCCTTCAAGTTAGATCCCTTTGTATCGTTGGTGATATTTCAAGCATTCCTGCTGATGCCTTTTCACGCTTACCTTCTTTGGAGGTCCTTCAAATAGACGGCATGAGATTGGAGAGGGTTCAATCTGGTGCCTTTTCAGGACTCCCCAATCTGAAGCATTTGTCGGTGCTTTTCAGTGATGAAATATGTAGGTCCGTCACCATAGAATCTCTCGCATTTGCTGGTTTGTCCAGTTTAGAGGATTTGACACTGATAGGTCTTAAGTTAGTCAATGTATCAAGCGATATGTTTGATCCGTTGATTAGCGTAACCAGACTAGAGATAAGAAGAACTTGTGCACAGGACCTTGGTGATATTTTCTGTTATCTTCCACATGGAATGTCCCATCTGAAGAACCTGAGTGTGATAGACAGTGGGATTTCAACAATTGAGACCGAAGGATGTCCAGTGGGATCAAAGACATGGCCCGTGACTGTCCTCTCTGGTATTCAAAACCTTTATATAACAGGGAACAGTATCAAAGTCATTAAAGCAAACTCCCTAGTTGCATTTCAGAATCTCTCCAGCCTTTTTTTGGAGTACAAAGGTGAGTCGCTAGATAGTATTTGGCAGTCTGGGATTGGAAAAGTCAACGAGTTCAGTTTGACAggaactgtattaaaaaaatattcaacaaaCTTCAAAGATTTGTGTCATCTGGTCACCAACCTTCATATTCAGTCCCTCAGCTTGATTTTTACTTCAATTGACAGATTGGCTGCAGAGGAATTAAAAGAGTGTGGGACAACTCTGACAAAGTTACTCATCAGCAAGTCAAAAATAGACCAACTGGACTTCAGTTTCTGGACAGGTAACACAGGTTTTCAAGCACTGCAAATGTCCTATATGAATCTGAAAGATGTTCCCTTCTGTGCTGCTGTGAATGGAACTGTCTGGTCCTTAACCTTGCTGGACCTCACCAGAAACTCAATTTCAGAAGTTGGCGGAGACCAGTTTGTTTGCATGCCTTTTCTCGAGCAGCTCTTTCTCAGCAATAACATCATACAAAACCTACAGTTGCATGCATTTCGTGGTGTGAGTCGCCTCAAAATTCTCAAAATCGATGGGAATAAGATCTTACAGCTCTCTGCAAAGGATTTCAGATCTCTTAAGGCTTTGGAGGTCCTGCATATCAATAATAACATCATTAAAACTATTGAGGACGGAACATTTCAGGATCAACAGGAGCTTCGTGAGCTGACACTGGGTAAGCTGGAGTTCATTTATGAGTTGCATCTAAATAGGATTTTTAACGGATTTCCACTGAAAATACAGCGACTAAGTATTGATGCACATTATGGAACTACTTTTTTTCTGGGACGTACATCACAACCTGAGGGAACGTTTGTTTTGGAGCTAAATGGAGACAGACTGGATTTTGCAGACTGTAATACTACTGTTTTTACAGCAGTTCGAGAGCTGAGTGTGATTTGCACTTATTTCATATGCAAAAATTTCTTCATGGCACCTTATTTTCCAAACCTGGAATCTTTTGAGATCTCAGGAGGAGCTGAACGAGCGCCTCTCAGGGACACTAAAATCAGTACTTTGCACCATCTCAAGCGCCTCAAGCTCATCAACCTGAGCTTTTCTAACTATACAGATGCCGGAAGCATCTTCTGGAACCTAACAAGCCTCCAGACTCTTGTGCTGGTAAACTGCCATTTGAACTTCCTGACTCAGAGTATGTTTAAAGACCTGACGTCTCTGCAGCTGCTACGTCTGTACAGTGATAGTCCTCTGGTCTTGACTGATGGTGTGTTCGAAGTTCTTCCAGCTCTAAATGCATTTGTTCTCGATAAAGTGGATTTCCAGTGCAGTTGTGAAAATGGTTGGATCCTTGATTGGGCGGAAAGCACTGAGAAAGTGCAGGTGATCTACTTGAAGAAGCAGATGTGTGTCTGGCGCTATCAGAAGCTCAACTTCTTGGCGACCATGGAGAAGCTGTGTCAGACTGACCAACAGTACATTTGCTATGTAGCCACAGCCGCAAGTGCTTGTCTTCTGCTGTCGGCAGCCATTGGATATCGCTTTGCTCGCTGGCCTTCTGTAGTCCTCTTCTTCCGCCTGAgaggatggctggagaggaagTTTGGTAGGCAGTGGCACAGGAGGAGGAGACGAGTCGAGGGTGCTGATGGGGAGATACAGGAGATGCGGTATGATGCCTTTGTGTCTTTCTGTAGCCTAGATGAGGCCTGGGTCCTGGGGGAGATGACTCCTCGGCTGGAGGAAGAAGGGAACCCGAGACTGAGGCTGTGTCTGCACAACAGAGACTTTGAGGTGGGTAAAGATATCATGGACAACATCACTGAGAGCATCTACAGCAGTGAGTGCACAGTTTGTTTGATCAGTCGGCGGTATCTGCGCAGTGACTGGTGCGGTCTGGAGATGCGTGTTGCCACACACCGGCAGCTGGAGGAGCAAAAACACCGTctcatcctcatcttcctcGAACACATCTCTCCTTTTGAGATTTCTGCTTTCCATCGTTTGGCCAGACTGGTGAGATCACGCACATATCTGGACTGGCCAGAGGATGAAGGTGACAGAGTACATTTCTGGGATCGTCTGAGGAGGAACATCGCAGAGGAACACAAGCAAGCTTCTTGAATCCACACCTGGTGCGTTCCTGCTAAAACACAACGACAACTGTGATAAAACAAATGatacaatttcattttttaaaaagacttacATTAAGATATGTGATGCTTATCAGTGTTAATTCATTCGTGTTCATGCTTTTTTAtgttcatcttttttaaaaattgtcttTGTGTAATTTCTTATTCCAAATTGTACTGTACTCATCACATGATTATAGTAATGTCTAGCAATGTCTGAACATATATTCCCATTATGCTACACAGAGTgcaaatttatttgaatataaacacTCAAGTATAaaagcacacatatatttagttccctttataaatgttattttttccgCTTTTTGCTGTACCTTTTgcgtttttaaatcattatgtgGACAAACAGAACTATACAGTGCATCCGGAAAGTATTCATAGCGcttcactttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166910 lncRNA downstream 3713 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA downstream 3713 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166909 lncRNA downstream 16225 14892040 ~ 14892395 (-) True G113034
TU166370 lncRNA downstream 193129 14715216 ~ 14715491 (-) True G112686
TU166328 lncRNA downstream 254470 14591362 ~ 14654150 (-) True G112659
TU166915 lncRNA upstream 32949 14946595 ~ 14947384 (-) True G113039
TU166926 lncRNA upstream 56959 14970605 ~ 14988931 (-) False si:dkey-246i14.3
TU166958 lncRNA upstream 197187 15110833 ~ 15197354 (-) False G113073
TU166979 lncRNA upstream 251351 15164997 ~ 15165440 (-) True G113090
TU166987 lncRNA upstream 254727 15168373 ~ 15170070 (-) True G113092
XM_043261773.1 mRNA downstream 8073 14899197 ~ 14900547 (-) False si:ch211-105c13.3
XM_043261772.1 mRNA downstream 9573 14896221 ~ 14899047 (-) True s100t
XM_043261859.1 mRNA downstream 161995 14727085 ~ 14746625 (-) True LOC122360979
XM_043260412.1 mRNA downstream 189040 14717064 ~ 14719580 (-) True LOC122360089
XM_043260202.1 mRNA downstream 193654 14701898 ~ 14714966 (-) True tuft1a
XM_043261042.1 mRNA upstream 302 14913948 ~ 14924517 (-) False pbxip1b
XM_043261039.1 mRNA upstream 302 14913948 ~ 14924517 (-) False pbxip1b
XM_043261041.1 mRNA upstream 302 14913948 ~ 14924517 (-) False pbxip1b
XM_043261040.1 mRNA upstream 302 14913948 ~ 14924517 (-) False pbxip1b
XM_043261038.1 mRNA upstream 302 14913948 ~ 14924517 (-) True pbxip1b
TU166030 other downstream 607001 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1224711 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3496843 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3622188 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 4042192 10861951 ~ 10866428 (-) False LOC122360812
TU167048 other upstream 554834 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 554834 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 554834 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 579175 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 903333 15816979 ~ 15819086 (-) True G113203

Expression Profile