RNA id: XM_043260133.1


Basic Information

Item Value
RNA id XM_043260133.1
length 1989
RNA type mRNA
GC content 0.42
exon number 5
gene id zmp:0000000881
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27966442 ~ 27971009 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAGAAGTTACTTAAAGCTGTAGTCTGTAACTTTTTGGCGCTCTGGCGGTTATTAAACAGGAATGGGTGCGTATTGCGGAAGAACATTGTAGCCGGatctacttctctctgtttacGTCTGTGACGAATCACGCAGGTATCGGGCTACTCCGCAGCCTACCCGAAACAGCCTAAATAgtctgaatataaacacttattacatgtgtgattcaggacaagccaaaaacaaGATGGCGTACTCAACACAAACGCTGGCTTCAGGCTGCTTTGGGAAAATATACAAGGAGAAGTTTGGAGACGCGTGGGCTGCTATGAAGAGAGTTCCTATAGGACTCATCAGCAGACAGCAGCTGGAGAGGGAGTGCAAAGTATATCATAATGCTCGCCATACAAATGTGGTGAAGCTTCTCGGTGATCCTTGGATAAAAGACTCCAAGTGGAACATTCCTTTGGAGTTCATCTTTGGGGAAGATCTTGAGACGACTATCTTCAAAGTACAGCTTTCTAAAATCCAGCTGACTCCAGCAGTGAAAGCCACGATCATCACTGGCATGTGTGAAGGTTTGCTCTATCTGCACAGTAAAGACATCGTCCACCAAGACCTCAAACCTGACAACATCATGGTGGAGCATCAGACCCATCGCGCTGTGATCATTGATCTAGGACTGGCTAAATTCTTAAGAAATGGACTCAGCTCTGCAGTGAACTTGGGCAATGAAGCATATTCAGCTCCAGAGATCCTGCAGAATAACGGAATTCGTGACAAACGCTCTGACGTTTGGGCCATGGGGAAAATCATAGCTGAACTCTGCGCCAGGATCAGGTTGCCCACCCAATTTGTGTCCCCTGTCAAGATCTGCGAAACTCTAAAAGACCAGCCATACTGCAATCCAGTGTGCAGGATGGTGGAACCCAATCCCAATTACAGAAGTTCTATGGCTGGAGTCATCACAGACATCAGGAGAGCTGCTTTAGCTCAACCAGCAGACTTTCGCCCAAAGGACGTCACGAGAGACTTGACGAGAGATGTCACGGCGACACATGGGAATGACATGAGGCAAAACCCAAAGTGGGGTCTGCCAGGACCGGTTCCGAAAGTGGAGGTAAATAAGCCTCCTGTGTTATATTATCGACAGGATCCACCTCAGCAGAGAGATCTGGGAAAGGCGATGGTACCGGTTAGAGGGGACGCCTTAAAAAAGCAGCTGTCTCTCATGTCATTTCCTTGCCCTCTCCCAGAAACTGGAAAAGTGACTCAGCAACGCTACATCGAGGAAAAAGGAGCTCTGGAATATAAAGAGATCATCACAAAGGATGggaaaatcataaaatatgagAAAGTGCAAATAACCAAAGACTCTTTGTGAATAgactttgttttgaaaaataccGTCAAGCGCTTTGATTTTACTCAGGTTaatggtttttctttttcctttttctttttttaaagaaaaactatcACGACTGTTTattaaacaggtttttttttgtcattgctgATAGCCTTCGTTCATTTTGTCTCATTTGAAgtataaaccattaaaatgtcaaaaaaaaatctgcttttctGTCATTAATAATGCGGCGTATATCGCGCATTGAAATGCGTTCAAATTCATTTCAACTTTATATAATAACACACATACAAATGGAGGTTTCTCTGGACTATTATTTTGGCTCCCTCTGGTGGACTGGATGAGTGAAGACCTGAAACGTTGTCGCCCTTGCTGCattttgcaaatgtaaatgtagctttgaagtgtgtatgtctgtgtatttcCCCcagttttgatttttgtttagaATAGTAGAAGATATTACAATAGAACAGTAGATACCAcagtttgtattattattgctgtatcggggagataatgcatgtttaaaaatcaaattaaaaagacCACCGAGACAGGTTTACAATTTGAGAATTTGcatttgtgaatataaaatttaataaaaaaaaaaattatttataataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172658 lncRNA downstream 4762 27960631 ~ 27961680 (-) True G116867
TU172656 lncRNA downstream 11735 27952568 ~ 27954707 (-) True G116865
TU172606 lncRNA downstream 258984 27706606 ~ 27707458 (-) True G116835
TU172605 lncRNA downstream 261508 27701126 ~ 27704934 (-) True G116834
TU172604 lncRNA downstream 289183 27675988 ~ 27677259 (-) True G116833
XM_043261984.1 mRNA downstream 26691 27933074 ~ 27939751 (-) True mex3a
XM_043261497.1 mRNA downstream 65682 27896728 ~ 27900760 (-) True tmem176l.4
XM_043261496.1 mRNA downstream 65685 27896728 ~ 27900757 (-) False tmem176l.4
XM_043260928.1 mRNA downstream 272602 27690440 ~ 27693840 (-) False LOC122360376
XM_043261721.1 mRNA upstream 120878 28090885 ~ 28127371 (-) True LOC122360891
TU172659 other downstream 1484 27963488 ~ 27964958 (-) True G116868
TU172609 other downstream 161672 27792704 ~ 27804770 (-) True G116836
TU172608 other downstream 238498 27707716 ~ 27727944 (-) False G116836
TU172557 other downstream 338782 27623427 ~ 27627660 (-) False LOC122359885
TU172389 other downstream 386578 27520190 ~ 27579864 (-) True LOC122360079

Expression Profile