RNA id: XM_043260169.1


Basic Information

Item Value
RNA id XM_043260169.1
length 5096
RNA type mRNA
GC content 0.48
exon number 18
gene id ddr1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14382802 ~ 14413321 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGAAAGAGGTCTAAAAGCTAAGCGCTTATGAGCGCGCGGAGAGAGAAGCACTGATTGAGGAATAAATAAGGACGCCGGTGTCGTTTGCGCTCGTAGAGGTGATCGGATCTTAACGCACATTCCTGCTTGCTTGCGCGGGACTTACGGCTTGCCTCCTTTCACAAACTTTCTGCCTTTGCTTTCCCGACGCCGTTCATTTACTGCTGATTTTTGTGGCTTTAAGCACGAAGTCGTAAAACTGCGCCAGATTATATTTACCTAGTATATAAACGACCTGCCGAAGTGAGGAACTCGGATTAAAAAGAAGATCGTTTGGAGACGTTTTCGCGTTTTGGCAGGCTTCTAGGTATGTCTGTAGAAGATAGTTCAGCTCTGGACAGGTAACTAGGTGTCACTGTTGCTATGGCAACGCAGATGCTGCCGTTGTTGCCTGCCCTCCTCACGGTCCTCCTCGTTTCCTGGACGACGGCCCAGGACGTGGATTGGCATTTTGACTCTGCTAAGTGTCGCTACGCTCTGGGGATGGAGGATGGCACCATACCCGACTCTGACATCACCGCATCCAGCGCCTGGTCCGACTCAACCGAGGCCAAACACGGCAGGTTAAGTAAAGGAGAGGGGGATGGTGCATGGTGTCCAGCTGGTCCAGTGTTTCCCAGCGGCTCCGAGTACCTTCAGGTGGATCTGCACAAGCTTTATTTCCTGTCTCTGGTGGGCACGCAGGGTCGCCACGCAGACGGGCTCGGGCGGGAGTTTACACGCAGTTACCGGCTGCGCTACTCTCGTGATGGACGACACTGGATAACATGGAAGGACCGCTGGGGACAAGAGGTGGTGTCAGGGAACGAGAACACACACGATGTGGTCCTGAAGGACCTGGGTCCGCCCATCATAGCACGCATGGTGCGCTTCTACCCGCTGGCAGACCGTgtgatgagtgtgtgtctgagagttGAACTCTATGGTTGTGTTTGGAAGGACGGACTAAAGGCGTACACTGCTCCTGTGGGTCATGTGATGGACCTGCCGGGCACTCCTGTATACCTTAATGACTCCATCTATGACGGCAGTAAAGAGGCAGGGGTGATGTTCGGAGGATTGGGCCAGTTGTGTGATGGTGTTTTGGGTGGGAATGATTTCATGGAGACTAAAGAGCTGAGAGTGTGGCCAGGATATGATTACGTGGGCTGGAATCAAGAAACCTTGGGCCAGCCCACTGTTGACATTGAGTTTCACTTCGAGAAAACACGGGTCTTTCACACCATGCAGgtgcaCAGTaatcacagacacactcagaaTGTGCGGGTGTTCAAGGAAGTGGTGTGTGAGTTTAAGGCCAGTCTGCTGAGCCCGTGGGCCGAGCCTGCGCTCAGTCTTCAAGTGCCGCTGTCTGACCTACACGACCCTTCGTCCCGCACCATCTCACTGCCACTCGGAGGACGTCCAGCACAAATTCTCCGTTGCCGTTTTTCTTTCAGTGACCAATGGCTCCTCATCAGCGAGATAAGCTTCTACTCGATGCCATTTGAGGATGGATCCATCCTTCCTCTGCCTTCCTCCAGCACTCGTCCTCTCAATGCCACTTCTTCTCAAACCCCCAGCCCCACAAACGGCACGAGCAGCTCTACCGaGTTTCCTGCTGTCACTCTGAGGGCAGGCTTACCTGTGGCCAAAGATGACAGCAGCAACACGGCCATCCTGATTGGCTGCCTCGTTGGAATTATCCTGCTCCTATTGGCTGTCATAGCCGTCATACTTTGGAGGCAGTACTGGAAGAAACTACTTGGCAAGGCCCAAGGCAGCCTCTCCAGCGACGAGCTGCGGGTTCATCTTTCGGTTCCATCCGACAACGTGGTGATCAATAACACTAACACCCACACGTACTCCAGCCGCTACCAGCGCATACACACCTTCCCAGACGAGCGGGACCGTGAAGGAGAATACCAGGAGCCCAGCACTGTGCTGCGGCCCCGAGAGCAACGTGACAGCACAGCACTGCTGTTAAACAACCCAGCATATCATCTCCTCCTGTCTGACCTGACACATGGCCCCAACAGGCTGACAAACTGCCACAGCCAGCAAGAAAAGCCCCAAAACCTGTCCCAGGcatGTGCTATTGATATGGTTGATAAAGGCCTGCCAATTCAAGAGGGACCGCCTCCCTACCCTGGAGCCCCGCCCCCTGGCCTGTCAGCAGCTCATTATGGAGAGGCATCTGGAGGCGGAGGAAGCGTTCCTCATTATGCAGAAGCTGACATCATCAGTCTGCAAGGCGTTAGCGGTAACAATACATATGCAGTCCCCGCCCTCTCTGCCACGCCCACTGATTGTCCACCACTGCCCGAGTTACCTAGGGAACGACTTATATTCAAAGAAAAGCTGGGAGAAGGACAATTTGGAGAGGTTCATCTTTGTGAGATTGAAAACCCTCAGGACCTCGCAAACCTTGAGTTCCCATTTAATGTCAGGAAAGGGCGCCCTCTGCTGGTGGCTGTGAAGATTTTAAGGCCTGACGCCTCTAAAAATGCCAGGAACGATTTTCTGAAGGAGGTGAAGATTTTATCTCGCCTGAAGGATCCGAACATAATCCGCCTGCTGGGTGTGTGCGTAAGCAGCGACCCACTGTGTATGGTCACAGAGTACATGGAGAGTGGCGACCTCAATCAGTACCTCTCCCATAGAGTGTTGCTGGACAAGTCCGGCCCTTCACACAATACACCCACCATCAGCTACCCAGCTTTGATCGCCATGGCGAGTCAGATCGCATCAGGAATGAAGTTCTTGTCGTCTCTGAACTTTGTGCACCGAGACCTGGCCACGCGGAACTGCCTAGTGGGTGGAGAGAGGGGTGAGGGGGAGGACCGCGGCGGAGAGCGACAGATAAAGATCGCTGATTTTGGCATGAGCAGGAACCTCTATGCTGGTGATTACTACAGGATACAGGGACGAGCTGTGCTACCCATTCGCTGGATGGCATGGGAGTGCATCCTTATGGGGAAGTTCACTACGGCCAGTGACGTGTGGGCATTCGGCGTGACGTTATGGGAGATGCTGAGTGTGTGTCAGGAGCAGCCGTACAGTCACATGACCGACGAACAGGTCATCGACAACGCAGGGGAGTTTTTCAGAGACCAGGGCAGACAGGTGTACCTGTCTCGCCCGGCTGTATGCCCACAGGGTTTGTATGAGCTGATGCTTAGCTGCTGGAACAGAGACTGTAAACTACGGCCTTCCTTTGCGTACATTCACTCCTTTCTCACCGAAGACGCCATGAACATGGTTTAGTAAGTGACAGTGAGATGAAAAGCAGAAGAATGTACGAAAGTGTGTGTGGACCACAGACTGGTGGTGTGTTTTTAAACAGACACGGCTAAGCACTCTTATGTAAATTAGCGTATTTTTTGATGGGTGGGTTGGGGTGAATAAAAGCCGCAGGTTCGGTGCCCCTAAAATAACCCACTTTTCACCCCTTATCCTGAACTCTTCAAGCAACGTTTTATCCCCGAATCATTTTAGACCCATTGACCCCTCACTATCACATCGCTATTCCACAGTATTTGCTTTCACAGAGACACCGATCTCCCAGAATGCACCACAGAAGTGGCCGAGTCATTGTTTCTTTCCCGAAACGTAATTCTgcctcgtgttttttttttctccaagaaTAAAACGGTCTTTTGCGTTCTGCGAGGTCCAGTAATGATGACTAAGCGCTGACGATGGTCTAATGTGGGATTGATTTTGGGATAAAATGTTGCTTGGCATCTGAACCTTAAATCCAGGTCCTCTAACCTGTATTAGAACTGTCTCTTCATTCCCTAAACACTGAATAGATCTCGAAACGTAATCATATAAACTGGTGGAGGGTTTCATAGTTAGATGACAGGCagcacacaaaagcacacgGCTCTACAAACCGATCATTTAGAAAGGCATTTGAAAGATGTGCGTATTAAAACATACAACAGCAGAAATAGCTTTTTCTACTTGCATATTAAGTGAAAATAGTGAGTTACATTTTTAGAAGTAAATTCAGTCTAACTTTGCTAGAAATCGTAGTCATGTAGACAACCTGAGGATGCATCAGCCAGTTTTTCATGTCTTTTCTGTGGTGGAGGGTTATTCATCATTTAGAAATGCTCGCGATCGTTAAACGTTCAACACCGAGTGGGACGTTTTCATCTCATtgatatgaaataatttttttcccctcttgcAGAACCATTTAAAGTGTTGATAAATGTCAGTAACATGTTGTAAAGATCTTTTGGTGTGTATTCAAAATTATGTACATAAATGGCTGAATTATTTCCATTATGTGAATAATTGTATACAGTGATGGCTGATATGTGAAACACAGGTTTATAACATGATAAATTTGTCAGATTCAGCCCAAATAGGAAATAGATTATTGTGACTCCACCCCTGCACATAAATGCTCCTTTAAAGTCTGTTCACGCCATGGACAAAAACTACAATTCTAAAGTTTTAATAACCGTTATGATTGTGTAGGAACGATGAAAGTCACTCCACTGATAGGATGACATCAGCAGAGAAACAATATGGTGGGAATCgctttcagccaatcagaatctgACTTTTAAGGAGCTTAAGCATTTAAAGTTGCAGAAGACAAAACCGCAACCTGTGCTTGTAATAAACAGAGCCTCATGCTGTGTTGGTGCAGCTTTCGTTCTTGGTGTAGACGGGCTTTTCTTCAGCCATCTCAGCATTTCCAGTCGCTCCTCCCTTCATTGACTATTCAATGAAGGGAGGagttcacaccaagaacaaagatcataatgataattatatagCATTCACACCAATAGAcgataatgttttgtttgttttaagcacTTGTCATATTGTTGCCTGTACAGCtgggtggattctgattggctgtcaatgctTTATGAtccattataaaaaaagtgaatacaAGACCTGTTCTCACTAACAACGATTACTATGAAGCTTTAAAGGCATACTCCACCCCAagatgaaacttttttttttcattaatctcTTACCTCCATGCCTTTACTCTCGTCTTAGGAacacaattaaagatattttggattaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166260 lncRNA downstream 54599 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 79267 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 86230 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 171863 14210693 ~ 14210939 (-) True G112474
TU166021 lncRNA downstream 172269 14208396 ~ 14210533 (-) True G112473
TU166305 lncRNA upstream 85224 14498526 ~ 14498744 (-) False dicp3.3
TU166339 lncRNA upstream 169177 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 169177 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 169177 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 178060 14591362 ~ 14654150 (-) True G112659
XM_043262007.1 mRNA downstream 11377 14366214 ~ 14371425 (-) False tubb5
XM_043262006.1 mRNA downstream 11379 14366214 ~ 14371423 (-) True tubb5
XM_043262002.1 mRNA downstream 17047 14357553 ~ 14365755 (-) True mdc1
XM_043262005.1 mRNA downstream 25432 14340664 ~ 14357370 (-) False si:dkeyp-77h1.4
XM_043262003.1 mRNA downstream 25432 14340664 ~ 14357370 (-) True si:dkeyp-77h1.4
XM_043261357.1 mRNA upstream 11191 14424493 ~ 14432469 (-) True gnl1
XM_043261510.1 mRNA upstream 19954 14433256 ~ 14445663 (-) True znf384b
XM_043261512.1 mRNA upstream 19954 14433256 ~ 14445658 (-) False znf384b
XM_043261511.1 mRNA upstream 19954 14433256 ~ 14445657 (-) False znf384b
XM_043261513.1 mRNA upstream 19954 14433256 ~ 14445656 (-) False znf384b
TU166030 other downstream 81183 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 698893 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 2971025 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3096370 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3516374 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 496023 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1055178 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1055178 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 1055178 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 1079519 15492821 ~ 15496375 (-) True rps19

Expression Profile