RNA id: XM_043260184.1



Basic Information


Item Value
RNA id XM_043260184.1
length 1101
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122359945
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13124348 ~ 13126202 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATCGCTTTCCTTTGGGACACAAAGAGCGatggaaacaaacaaatgataaggaaaataaaaacaacagtccACCGGCTCCGTGGTGGGTACAGGGTGGTCTGTATGCATAGAAACACTATGTAAATGGAGGCTGGGAACGGCACTGGCATTCAACATGCTCTGGCCTGAGAGAGGACAAATACttggagaacatttttatgCTAATCAATTTTAGGAAAAAGATCGGATTTAACGATATGTTAGAATAAACAGTGTATTTACAAAAGAAGtattttcttcatgttttgGAATAAAAACGTGCTGGTCTGAGTCTTTGTAAAGCATGGAAAAAGGAGTACAGAAATGACTGACACATTTGTATGAGAAGAGAAGGACAACTCCAAAAGACGTACGACCTAAAGGACAACATCTTTCTAAAGTCTTTACTTTGTTAAAATCTTTAAGGAGTTTATAAAAATCACCCATCAACGGGAGAGACAGGCAACTTTGGAAATATCTTCCTTTTGTGATTCTCATTAATGATGGCAACACCCGAGGACCTTTCGGCCGATTCAAAGCCgactcaaattgtgaaatatgatcCAAAGTCTGAGACTGTGACGTTACCGGATGGGCTGGTTTCTGTGACAGGTCTCACGGTGGTGACGGGGGGAGCGGAGCTGTCCTGTGGCTCCTGTATGTTGGCCTTTGCGTTTTGGGGCACTCTGGTTGGTTTGAGTGTGGTGTCGGTGGGTTTGTGGGATCATTTGGAGTACAGCAATGGTCTGTCACACCTTCTGGCTCTTGGATTGGTACTGCTGCTTAGCAGTTTGAGTCTGGTAGCTGTGATCTTCGCCCTCCGGTTCTTCATGAAAAAGAGGAGAATGATGGCCAGAAGAGAGAGGGCAGAAGCCAATCTAGTGCTGGTTAATGAGCACGCAgaagttgttttaaaaagagTCACGGTGTAAAAGAGCaagtgagaaaaaaactaatacgTCAGACTCCCTgctccatttctgtttttctttatcgCTCTTTGTTTAATCCTGGAATCATGGAAGACGCAAGAGACACATTTGCTTCAACATTCATGTCTTTATTAAAAGAGTTTATCTACTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 98219 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 471942 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 499729 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 512354 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 634228 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 61717 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 70676 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 87728 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 91001 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 163003 13289205 ~ 13292423 (-) True G112299
XM_043260183.1 mRNA downstream 461 13120866 ~ 13123887 (-) True LOC122359944
XM_043260525.1 mRNA downstream 4475 13116477 ~ 13119873 (-) True fdps
XM_043260522.1 mRNA downstream 8253 13100858 ~ 13116095 (-) False rusc1
XM_043260521.1 mRNA downstream 8253 13100858 ~ 13116095 (-) False rusc1
XM_043260520.1 mRNA downstream 8253 13100858 ~ 13116095 (-) True rusc1
XM_043262032.1 mRNA upstream 10445 13136647 ~ 13143911 (-) False si:ch211-149k23.9
XM_043262031.1 mRNA upstream 10445 13136647 ~ 13143911 (-) True si:ch211-149k23.9
XM_043262033.1 mRNA upstream 17847 13144049 ~ 13146414 (-) True atg12
XM_043261054.1 mRNA upstream 26147 13152349 ~ 13157873 (-) True grwd1
XM_043261899.1 mRNA upstream 32600 13158802 ~ 13162784 (-) False zgc:174888
TU164609 other downstream 1712571 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1837916 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2241137 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2257920 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2376048 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 527858 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1108352 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1783123 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2342278 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2342278 15468480 ~ 15496375 (-) False rps19

Expression Profile