RNA id: XM_043260187.1


Basic Information

Item Value
RNA id XM_043260187.1
length 3102
RNA type mRNA
GC content 0.47
exon number 7
gene id znf385d
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25568531 ~ 25627099 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCGAACGagagataagagagagagagagcagtgcCTGAGGAACACTCAGACAGAACAAATGAGCAGCCGCGGCTCGACTCCCGCCAGAGACGCTGATATCGGCACGCCGGAGAGAGCTGCTTCACCAGGAGTCAGATTACAGCGCTCTGACACACGGCTGAGGACGGAGGTGCGAGAGCGAGACTCAGACTTTCTCTGAAGTGGGATCTCCTCTCACACACGCCGTGTACAGAAAGCCAGCGAGGTGTCGTTGCAGTCCTCGTGGTCACGGTTCCCACATGCACAGATGAGATTATGGACTCACTCTTGACGGCAGCGGTGCACGGGGACGCCACGGACCTGGACGCGTGACGACCATGGAGAGCATGTTTATGGATGGACCCTGTTCAGAAAGCTGTTTTGCATCACACGTTCAGCGCCTCGTCCTCGTCTAAAAGGAAAGCTGTCTCGTGCGGCGTGTGCCAGCTGAGGTTTAACTCACAGAGCCAGGCATTGGCCCACTACAAAGGCACCAAACACGCCAAGAAGCTGAAATCCTTGGACGCCCCGAAATGCCTCAAACACAAGAGTTCCCTGGTCACCAGAGAAAATACCAACAAGGAGCCGCCTAaaggcctctctctctccacgACGGCCGGCAACACTGACACAAAAGGTGGGAGTCCTGTAGAGCCCGTGGCCCCTTCTTCGCCCTCTTCTGCCCCGGAGTCCGGCCCCGGCGTGGAGCCCACAGAGCCGGAGTCTACCTCAGGGTCAGGAGGAGAGGACGGCCGCTCCATCACGCCCAGCCCGCCTGAACCGGAGGAGAACGACCCCGCCGTCAGTCCGGAGACAGAGACCGAGCCGGAGACGGAGGATGAGAAAGCTCTGCGTCTGCTCTACTGCTCGCTCTGTAAGGTGGCCGTCAACTCGGCGTCACAGCTAGACGCTCACAACAGCGGCACCAAACACAAAACCATGCTGGAGGCTCGGAGCGGGAACGGCTCCATCAAATCCTTCCCCAGGGCCGGGCTGAAGAGCAAGCTGGCGGCTCCCGCTAAAGCAGACACGGGCCTGCAGAACAAGACATTCCACTGTGAGACCTGCGACGTGCACGTCAACTCAGAGACGCAGCTCAAGCAGCACATCAGCAGCAGACGCCATAAAGACAGAGCTGCAGGGAAACCAGCTAAACCCAAGTACAGTCCTTACACCAAAACCCAAAGAGGAGCCACCAAACACACGCAGGTGAAGATGTCAGCCGGTAAAGACCTGTGTCCGCCGCTGACCACCAGGATATTACCGTCTCACCTGGCAGCTGTCGCCGCCGCAGCCGCCGCCGTTGGCTCCGCCTTCCCGCTGCGTGCCTGCCATAACCCCGCCCTCTTTCAGACTCAGTCCCTCCCCACCACGCTGCTCCGCCCTGCACCGGGGCCAATCAGGACTGCTCACACGCCTGTACTGTTTGCCCCTTATTGACCTTTGAACTATGACCTCCCGAGGATCGGATCATTAACCCCTCCATCACCTCATACTCGGATCCAATGCGTGATATCGCAAtaatttaaagacaaaacacGAACCAGGTAACTATGCATCATCATTTACATGTGACACACTGACGTGAAGCTATAAATATATTGGCGGagatttgatttttgtttttcttctgattcATCACTATCATCGCTTACAGTACAAGACCGATTTGTAAATTTTAAGATGAGTTCGGGAACACGGAGATGTTAATAATCGGGGGAAACGGAAAGTTGTAtttctctgctgttttgcacTTTAAGTCTGTCTGTTTTCAGTGCTTTAGGTGACTAGATCCCTTCCTGTTTCCAGCTGTTGGTCAGCAGTGCTTCATTTGTCGATGGACCCGTTTCACATCTCTGCCATTCTCAGAAACAGATTTAATCATAAGGAAGCGGTGAATCATTTTGCaaagaattatttatattggaaaaagaaaaaaaaaacttcatagtGTTTCTGCGACTTCGCAAAGGAGGAggaaatatttatgcatatttcagcaaaatcatctaaaaaaaaattatatataaaatatctacatTATCAGTTATGATGatcagaaaacagaaatgtcaAATCTGCAACCACTCcctcaaaaaatacaatttttactcatttattttccaaaacgAATGGCTTTATCattaatcatgcatttaaaaaaaaatcactaatttCACAAATTGcaagtaaatttcacaaataaagaaaCGCCAATTGgcacattgaattaaaatggGAAATTTCCAAGAAGaaaacctaaagaaaaaaaactgcaacgTAAAAAAGCAAAGTACAGCGTTATGGATGCACATGAAAACATTGCTGGATTTACGGTGTTAATAACTCTGGAAATGCATCTGTGAAACAGGTCCATCAAGACATAACGGAATGAGTTATTGGTGATGGATCTGGCAGGTCTGGgacattaaatgtgtgtttcatACAGTTGTAATGTAAGGCTCTGCTTTCACAGACAGAGCTTAGCCTATGCCAGGATTGGGccatagtttatttaatttttataaacattactggtgtgcatcttgagacaaaacactGTATGTTTTAAGATCAGCCAGCGCAAGTTCTTCTCAGTTGAAACATCTCAGATTTACGTTTCAGTCTAAGACTAGGCTTAGTCTCATCTGTGAACGGGGGGAagaagtgttattattattattattattatgttaggATTGTTAGGCCTGCTGATATcaaaaatggtcaaataaaagttaattaattcagttttaagGCCCTGCAAAAACGGTCAGTGTTTGCAGTCCGATTCCAGATCCAGATCCAGCTTTTCCAGTACAAATTAAGCCCTGTTGTACCTgttagtgaatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagcagAACTTGGGGGAAGATAAGTAGGTAATTTCCAAAGTAAAATGCTGCTGATTCATGTCAAAGCAAGGTTAAAAATATAGTAGGATGTTTGCTAAAcagataaatatgtaaatatgtaggagtgtgtgtgtgtgtgtgtttgcgtgtgtgcgtgagtgtgtatGTGGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171609 lncRNA downstream 10513 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA downstream 11058 25211393 ~ 25557473 (-) False G116237
TU171618 lncRNA downstream 389924 25177452 ~ 25178607 (-) True G116242
TU171572 lncRNA downstream 485935 25079267 ~ 25082596 (-) True G116212
TU171502 lncRNA downstream 733167 24835099 ~ 24835364 (-) True G116164
XR_006252863.1 lncRNA upstream 37621 25664719 ~ 25702534 (-) False LOC122361130
XR_006252864.1 lncRNA upstream 39984 25667082 ~ 25702534 (-) True LOC122361130
TU171646 lncRNA upstream 40288 25667386 ~ 25667668 (-) False LOC122361130
XR_006252865.1 lncRNA upstream 41262 25668360 ~ 25709709 (-) False LOC122361130
XR_006252862.1 lncRNA upstream 41262 25668360 ~ 25709709 (-) False LOC122361130
XM_043261713.1 mRNA downstream 249453 25314054 ~ 25319078 (-) True si:dkey-82o10.4
XM_043261866.1 mRNA downstream 268670 25294224 ~ 25299861 (-) False LOC122360982
XM_043261865.1 mRNA downstream 268670 25294224 ~ 25299861 (-) True LOC122360982
XM_043261712.1 mRNA downstream 336529 25226157 ~ 25232002 (-) True LOC122360869
XM_043261711.1 mRNA downstream 362323 25200951 ~ 25206208 (-) True LOC122360868
XM_043262091.1 mRNA upstream 85813 25712911 ~ 25728665 (-) False nek10
XM_043262090.1 mRNA upstream 85813 25712911 ~ 25728665 (-) True nek10
XM_043261514.1 mRNA upstream 104095 25731193 ~ 25733582 (-) True lim2.5
XM_043260290.1 mRNA upstream 108425 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA upstream 108426 25735524 ~ 25745044 (-) True vsig10l
TU171232 other downstream 1240558 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1893233 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1958690 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2044149 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 2634564 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 40721 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 752574 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1180022 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1183219 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1183219 26810317 ~ 26812909 (-) False G116632

Expression Profile