RNA id: XM_043260196.1


Basic Information

Item Value
RNA id XM_043260196.1
length 1265
RNA type mRNA
GC content 0.42
exon number 6
gene id si:ch211-215k15.4
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20389474 ~ 20391866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGGCCGGTCTCTTGGTGTTGTGTTAAGATGAGCACATTTTGCCCATAGAGTATACTTCATCTTGTCTTCATACCGaagctttaaaaatacagAACAATGGACTTGCTTGTGTTTTTCCTGCTTTGTACCTGTGTGATGCTTCGTCCTACGGGCGCAACTACAGCTAAAGCCAGAAATCTTGCTTTATATGGCAAGGCCACACAATCAGACCTGGTAGGGAATCCTTGGACTGCAAATGCCCATGCCATTAATGCTATCGATGGAAATCGTGACTCTAATTATGAACATGGCTCCTGTACTGCTACCGAATGGCAAGATGACCCATGGTGGAGGTTAGACCTACTTGACAGGTATGTAGTGACCTCCATAACCATCACCAACCGAAAAGATTGCTGTCCTGAAAGACTTGATGATGCTGAGATACACATTGGGGATTCTCCGCTGAAAGAAGGCACCGACAATCGATTGGCTGGAAGGATTTCCTCCATTCCAGGAGGGAGATCGCTCACTTTAAAATGGAAGAAAGGCATTACAGGCCGCTACATCAATGTGGTCATACCTGGAAAAAATCGCCTTCTTACTCTCTGTGAGGTCGAGGTTTACGGTTATCCAGCTCCTGATGGTGAGAACGTGGCTTTAAAAGGGAGAGCTACACAGAGTAACCTGTTCGGACATGGCTTTGCATCCAACGCCATTGATGGGAACAAAGATGGTGTTTACAGTCACGGATCCTGTTCCCACACTGAAAAATGTCTCAATCCCTGGTGGAGACTAGACctactgaaaaaacacaaagtgtTTTCAGTAGTAATTACAAATGCAGCAGACAAGGACCCTGAAAGATTAAATGGAGCAGAAATCAGAATTGGAGACAGCCTAGAAAACTACGGCATCAATAATCCAAGGTGTGCTGTGATTTCTTCCATTCCTGCTGGATTTTCCACCACCTTTGATTGCGATGGGATGGAAGGACGTTACATTACTGTTGTTATTCCACGGGAAGAATATCTTTTATTGTGTGAGGTTGAAGTGTACGGATCACCACTGGATTAAGAAGCACAagaatttaactgtaaatatgtTCACATTCCAAATGAAGTAGCTGAATTAAATAACAGGAtctaaatgggaaaaaaaatattgattgctGTATGGctttactttaaacaaacattcaaaCTATCAGAGTTTGTGATACAGTTAAGCAGGGCATGTATTGTCCTAAAATTATtcacccagaaataaaaatttgctgaaaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169450 lncRNA downstream 84030 20302983 ~ 20305444 (-) True G114768
TU169443 lncRNA downstream 84030 20303321 ~ 20305444 (-) False G114768
TU169418 lncRNA downstream 144235 20245021 ~ 20245239 (-) True G114747
TU169376 lncRNA downstream 145321 20174163 ~ 20244153 (-) True G114718
TU169494 lncRNA upstream 83651 20475517 ~ 20475747 (-) True G114798
TU169497 lncRNA upstream 91935 20483801 ~ 20484071 (-) True G114801
TU169499 lncRNA upstream 93530 20485396 ~ 20485725 (-) True G114803
TU169500 lncRNA upstream 94029 20485895 ~ 20486127 (-) True G114804
TU169585 lncRNA upstream 108654 20500520 ~ 20520126 (-) True G114853
XM_043260302.1 mRNA downstream 1858 20386077 ~ 20387616 (-) True pkdc
XM_043261880.1 mRNA downstream 4018 20379180 ~ 20385456 (-) False herpud2
XM_043261881.1 mRNA downstream 4183 20379180 ~ 20385291 (-) True herpud2
XM_043260152.1 mRNA downstream 76235 20305818 ~ 20313239 (-) False dpy19l1l
XM_043260151.1 mRNA downstream 76235 20305818 ~ 20313239 (-) True dpy19l1l
XM_043261474.1 mRNA upstream 188416 20580282 ~ 20592827 (-) False fli1rs
XM_043261477.1 mRNA upstream 188416 20580282 ~ 20592826 (-) False fli1rs
XM_043261478.1 mRNA upstream 188416 20580282 ~ 20592539 (-) False fli1rs
XM_043261473.1 mRNA upstream 188416 20580282 ~ 20592335 (-) True fli1rs
XM_043261475.1 mRNA upstream 188416 20580282 ~ 20592332 (-) False fli1rs
TU169372 other downstream 221860 20166795 ~ 20167614 (-) False G114715
XR_006252818.1 other downstream 968380 19416962 ~ 19421094 (-) False cd22
TU168710 other downstream 1568386 18815216 ~ 18821088 (-) True rpz
TU169487 other upstream 50099 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 50099 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 260111 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 620741 21012607 ~ 21017105 (-) True G115003
TU169949 other upstream 984024 21375890 ~ 21378836 (-) True G115093

Expression Profile