RNA id: XM_043260200.1


Basic Information

Item Value
RNA id XM_043260200.1
length 4553
RNA type mRNA
GC content 0.42
exon number 8
gene id si:dkey-92i15.4
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14687731 ~ 14697088 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGGAGCTCACAAGCCACACGCACATGTACTGTCAATGTATCCAAACACTGTGCACGTGGTTTTTCAACGTTCTCGAATTCTTTTCAGTGAAAATGAAGTGAGCTGTCTGAGAACATCTGACTTGGTGGACAGCTGACCTTTATCGGATCAACGCTCTGAACAATGGCACTGATTCTTTCAGAAGGAACAGAGcttCTAAGCAGCTCTTTCTGCTGCACTCTTCATTTGCTCTTGCAGCTGCAGGAAGTTGAGCAACTCAGCCCACAAGTGTGCCACAGAAATACTCCCAGAATAAGATAAGGACCAGAGAGTGCCGAGACCCATTGCTAGCTCTTTTTGGATCCAGATCGTGAAACTTCTGCCACAGAGTAAAGCTGAAGTTAGCAGGTCTCCTTCACCTCCCTGGATTACAAACTCCCTGGACTTATTCCAGCTTTTACAATGATGGTAGGAAAATACATTACAAGCAAAAAGAAACAAgcatttttgctgaaaatgttagCAACCGGCTTTCAATTCAAACTGTAATGAATACACTGTGTGACATTCAGCATGAGTTTGCATACTGGAAGTTTTGTACGTCAGTTTCCTGAATCAGACACAGCTAGCGGCGCAACTGAAGGTGCAGAATCATCCAGTGGAACGGCAGCACAAAGTCACAGTCAGTTATCTGTAAAGCCGTTTGGCTCAGCAGCTGCTAGATTCAAAATCCGCTCTGCTAAAACACTTACTACCAAGGACCTCAGGACAAAAAGCTTTCCTGAGAGTGAAAACGTTGAAGACTTAAGTAAGAAAAGTGATGCTACTAAGGATCTCAATAAAGCCTGTACTACTCCTGCTAGTTATGCCCACACTAACACTGATGACAAAGAGACAGGTAAAACTTTAAGCAAGGATACACACAAGGACTCAACTCTTCCGAGCAGTTCTGAGAAGGGTGGTGTGAGCgctaaaacattaaacactCAAGAAGACAAGAGTCAGGCAGCAAGTGACAGGAGCAGAGGAGATGAATTGAAGAGATTTTATCagacaaacaaaagcaaaagcttaGACTGGAGAGCAGGACATGGAAATAAAACCGGGATGACTAGTGGGACCAGAGAATTTGACAGTTATACAAGGCGATCTGATTTACAAAATTTAGAGAGAACAGGGACCAACGACAAAATAACTTCATTCACACCAGAGAATCAACCCAGTGGTATTTCACGGAAGGTTCAAGCTTTCAGTGCAGCCAATCAAGGTGATCAGAACAGTGACAGAAAGGTTTACCCAGTCTCTGGATCTACATCTGTGAGAATGAACCGGGTAAATTTTGCTATGGAGCGAGCAAACAGTGGCCAGTCACTCCCATCAAGATTGAAGCCAAGACTTAGCCAAGGTTCTATTGGAGAAGATAGCAGTCTCTGGCAAGGTGAATCGAATTTTGATAAGACGGACAATAGGAAGGGATCCTGGGCCAGAGAGCAAGGATCTTCCAGTGCTGAGGAAATAACTGGAAATCAAACAATAATGGAAAGAATTGCGAAACTGTTTGGGCCGGATGCCAACTCTGACCCACACCCAAAGGATTCAACCAGATTAAAACGCAGCAATACTGTAAATTCTGATAATTCATATCCCAAATGTATGGACATGGTGGACTCTACTCAAAGTCACATAAAATACACTACTGACTATGAGTCTGGAACGTTTTTAGATTATACTGACAGCCAACAGGGGAAACCTTCTTATGATACAGAAAAAGCTAGAACATTCCCTAGAGGGTTTTCAAAATCATACTTTGATCCAAAGCACGAACCCTCTACTAACAGGGAGAACAGAAATGATCAAAGGGACAGTTCCTCTGGATTAAGTTTTTCGGCAAGTTTGTCATCAAAACCTAAATGGAGTATCGAAATTTCTTCTATCAAAAAACCTCAGTCCTTTCTGCCTAAAGACAATGAAGAGACAAGCAGAACATCGTTTACGGGGTCTTCAAAGTATTGTAGTCAGTCCTTAGAAAGAACCAGTAGTAGACTGTCAGCAACTGCGCAATACAGTGTTCACAGGAACCAGCCTGACAGCTCAAGCATATCCAGACAGGGTGTCAAACACCTATTAACCAATTCTGGAGAAATCAAGGAGGAAATTGGCAATGATGAACAATCAGATAAAGAGATTACAAAAAAACTGgacataaatgaaaacaagtATCTTGGTGGTTTGCAAGATGGAATTACCCAGCCTAAACACTCACTAGCCTCAAAAGGAGGAGCACCCAATGAAATCCATAAAGAGGATGACGATGTATTCACAGGTAAAACTAAAGGAAAGAAAGGAGAAAGTGTGCCAGAAAAGTTGCGTTTACCGTCTTCAGATTCTGTAAAGAATACAATTAACATGTTTGAAACTTTGGCTCTACAAAGCAAGAACACACCAGATATTCTTCGCACCAGGAGGGCCTTATCTGTACCAGAGCATCCCAAGCCTGCAGCTCTAATAAAGAAGAGTGATTcagacaaaaatctaaattttggAAGTGTTGCAGGCAACACAGAAATCATAAGAACAAATTTCTTTAGCAGAAGTAATTCTAATGAGGAGACTGAACGCACTCTAGACCTAGGTAGAACTCTTCATTCAAATTCCACAGTCAAAGTAAGACCAACATTAGAACAagagacacacaaaaacagttttgagGTAGCATTAAAACAATTGAATGAATCAAGAACTGACCAAGGTACCATCATGAGGAATGAGGATGAAAGGAGGactatgaataaaaaatatacggATGAAGCAGATTTCACCATGACTGCTCACTCAGGGCTCAGAGACAATGGAGCAACAGAAGAAAAAGCAAGAGTCCCATCAATCTCTCAACAGTcgaatgttaaaaatatattaaagcagaagtcatttaatgtaaaaatagttgatgatgatgatgacgatgaaaACACACCAACTAACTCGCCTGACAGAGCCCCTCTTAAAGTTAACATTCAACAGCAGAGTAGCCCTGGAGCCGTAACAGAAAATGGTACCCATCCCAAAGTGCTGCCCAGTCATTTTCAAACTTCTCCTCCAATGCAGACATATTCCTCACTCAATACTTCAAATAATAACAACTATCAAACACCAAGAAAGGATTTGACCACAATCACTACTAGCATGGCTAGGTGGAGTTCTGATGAAGAAGACGATGATGAGGAAACAGACACTGAAGAAGAAGACTCTGATTCAGGAGAATCATCTGTGACTATCACAAGCAACATGAGCCAATCAGAACGCAGAAGTTTCTCTTTAAGTCTTGTGGAACTATgtaattatggcggcgtggacTATAAACCATCAGAGGATGATGAAGATTTGCCATCTGGACGGTCTGCATCCTTGAGCTCAGACATCTCTGCCTTCTCTTCTGTGACTCTGCTGAGCACTGATGAACTCGACCGTTTACTGGATGATGTCAGGGGCTTGGGAGATGACACCCTACAGAAATATGAAGATGTGCAAGTGGTTGTGTTACACAAGGAGGTGGGGAGCGGCTTAGGATTTACCTTGGCAGGTGGAGTGGATCAGAATAAACCAGTCACAGTGCACAGAGTGATACCAGGTGGAGTCGCCGCACAGGAAGGCTCAATCTTCGAGGGTGCTCAGGTGCTGTCGATCAATGGCACTGCCCTGCAGAATTCTGCCCACTGGGAGGCTCTGCGTACTTTGAGAAAAACGAGGGGGCAGGGCATGGCGGTGGTTGTTCTTCAGAGCTGCAACAGCAGAAAGGAGGTCACTGAAAAAACAGGAATAACAGGCAGCAGAGTCCGTGTGAATCTGAACAAGTCCAGCTCTGATCTTGGCTTCAGTCTGGAAGGAGGGGTGGGATCCAGCTCGGGAGACAAACCTCtcactgtacaaaaaatattcCGTGGTGGGCCAGTTAATGAAGTGTTTCCGGGGGATGAGTTGTTGGAGGTGCAGGGACAGAGTTTGGTGGGTATGATGCGTCTTGAGGCTTGGAACCTCATCAAGAGACTGCCCCCTGGTCCAGTGGAGGTCTTACTACACCGTCCTCAGCAGCCACATTGAAGACCGTCTTCTTCCGTCTTGAACCTCAATTCTCAACACAATTCAGTCAATTTAACACTGTTTTTTCTATAAGGATTTTTGCTGTTACAGGTTCTATGAAGTTATAATCTTCAATTAGAAGTATCGTTCATTATAgtgttttgaagtgttttttttcttcactgataTGAGATCATATCATAACTATCATAACTatatcattctttttttcttactgaTATGACATCATATCATAGCTATGAATTAATAATGCCAAAATTAAAGGCATAAAAGCACTGGAGGCCAGGAGGTCATTTTTTTACAACACctcttttaaataatgtttaagcTCTTATATTATGTAactattaatgtaatattgcaCTATCAgtctttacagttttttaatgccactatgtatatgtgtatatgttgtCTGTACAGCACAAATCCGTCCCAATTAACTCTTTTTCATAATAAAGACAAAGAAATcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166328 lncRNA downstream 33581 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA downstream 49399 14633214 ~ 14638332 (-) True LOC122359963
TU166357 lncRNA downstream 50338 14635563 ~ 14637393 (-) False LOC122359963
TU166341 lncRNA downstream 99862 14582479 ~ 14587869 (-) True LOC122359961
TU166339 lncRNA downstream 104419 14582479 ~ 14583312 (-) False LOC122359961
TU166370 lncRNA upstream 18128 14715216 ~ 14715491 (-) True G112686
TU166909 lncRNA upstream 194952 14892040 ~ 14892395 (-) True G113034
TU166910 lncRNA upstream 202094 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA upstream 202094 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166915 lncRNA upstream 249507 14946595 ~ 14947384 (-) True G113039
XM_043260197.1 mRNA downstream 9973 14651573 ~ 14677758 (-) True atp8b2
XM_043260201.1 mRNA downstream 36839 14643888 ~ 14650892 (-) True il6r
XM_043260210.1 mRNA downstream 104382 14582479 ~ 14583349 (-) False LOC122359961
XM_043260209.1 mRNA downstream 104382 14582479 ~ 14583349 (-) False LOC122359961
XM_043261481.1 mRNA downstream 106489 14568314 ~ 14581242 (-) True otoa
XM_043260202.1 mRNA upstream 4810 14701898 ~ 14714966 (-) True tuft1a
XM_043260412.1 mRNA upstream 19976 14717064 ~ 14719580 (-) True LOC122360089
XM_043261859.1 mRNA upstream 29997 14727085 ~ 14746625 (-) True LOC122360979
XM_043261772.1 mRNA upstream 199133 14896221 ~ 14899047 (-) True s100t
XM_043261773.1 mRNA upstream 202109 14899197 ~ 14900547 (-) False si:ch211-105c13.3
TU166030 other downstream 386112 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1003822 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3275954 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3401299 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3821303 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 212237 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 771392 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 771392 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 771392 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 795733 15492821 ~ 15496375 (-) True rps19

Expression Profile