RNA id: XM_043260230.1


Basic Information

Item Value
RNA id XM_043260230.1
length 1296
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122359968
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19259324 ~ 19261794 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGAACAAAAACCAGACAAGAGCGACGTTTCCACATTTGCACTGTAAGGAAACACATTCGAGGCTGCAACAATGTTTGTGATTCTCCCCGCGAGCATATGGACCCTGACGTCTTTGATTCTGTCGGGTGCTCTGGCAGCCGACTGGACAGTGCATGTTCCCATGGATCCAGTATACGCTCCTCTTGGTTCTTCTGTGGTTCTGCAGTGCTCCTACGACTACCCCGAGGAGTCTGAGCAAGGGATACCTCACAAAGTGTTGTCGGAGATGTGGTGTCTGAATGAAAGCTGCTGCATTACTCCGAGATACGTGTACCACAGCGCAGGGGTGTTCCCTGAGCCCTCGTACCAGGGCAGAGTCAAGTTCTTGGGGCAGACGGGGAGCAGAAACTGCTCTCTGATGATTTCTGATCTAAGGTCAGAAGACAGCGGCGTGTACGTGTTCCGGTTCATCACCAACCACCTGAAGGCCAAGCTGCCAGGACAGAGAGGAGTGAATCTACAGGTCACACATCGGGCAGAAACAAGAAGTGCATCTTCATCCACCACTGGCATTGTGCTTGGAATTATTATCATGGTTATCATAATAGCAGGCATTGTGATATTCATCAGTCGGAAGGCACGAGCAGAGAGGACACGATCACTTTAAACAAGTTATCACcacaaaggaggaaaaaaaaactgatcaaaacaaagattttaacCAAAAgttctgctttttttctgcttgtgggttacattttttgcattcatttatgcATCCATTACGGAGTCTgttatttaaatgcttatatCGTTTTCCGCATATCAAGCAGCACGATGTTTGATtcacatcttttattttttggatttcCTATTTCACCTTTAGCATCATCGTATCGCGTCTTACATTTTGCAAGTCACTGCCGCTGTGTTGCATGTTTCAGGGTTATGCCCTCAGCCACTGAACTACAGACtaaacaacatgttttttttttcacaaagtctgtaaaaagagaaaataatggTTATGTTTAGATAGTGAGGAATTTATTAAGACAGCAGGTTAGATACAGTAGAAATCTCACATTGTAAATCATAGAAAACCGCCTCTCATTCTACCTTCAGTTATCAGTGTTGTTATTTACTTACCCTTGAATCTTCAATCAGctccacaacaacaacaacaacaacaacaacaacggaTATTGCATGTGTCTTCAGTATTCTGATATGGCAGTAATGCCAAGAATATGCAtatagatattgtttttttgtttgttaatgttaattaaatttagTATTTACTAAGTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168880 lncRNA downstream 196153 18992862 ~ 19063171 (-) True G114399
TU168882 lncRNA downstream 217558 19012655 ~ 19041766 (-) True G114401
XR_006252756.1 lncRNA downstream 271398 18985829 ~ 18987926 (-) False LOC122360016
XR_006252755.1 lncRNA downstream 271402 18985403 ~ 18987922 (-) True LOC122360016
XR_006252754.1 lncRNA downstream 271405 18985403 ~ 18987919 (-) False LOC122360016
TU168954 lncRNA upstream 18634 19280428 ~ 19283527 (-) False G114458
TU168955 lncRNA upstream 18634 19280428 ~ 19283527 (-) True G114458
TU168959 lncRNA upstream 31199 19292993 ~ 19294087 (-) True G114462
TU168929 lncRNA upstream 43712 19305506 ~ 19307497 (-) True G114433
TU168968 lncRNA upstream 46124 19307918 ~ 19308512 (-) True G114468
XM_043261885.1 mRNA downstream 9675 19243942 ~ 19249649 (-) True dnase2
XM_043260179.1 mRNA downstream 48138 19199873 ~ 19211186 (-) False phf1
XM_043260178.1 mRNA downstream 48141 19197851 ~ 19211183 (-) True phf1
XM_043260781.1 mRNA downstream 63900 19095755 ~ 19195424 (-) False syngap1b
XM_043261313.1 mRNA upstream 155168 19416962 ~ 19421094 (-) True cd22
XM_043260250.1 mRNA upstream 214024 19475818 ~ 19479474 (-) True upk1a
XM_043261248.1 mRNA upstream 225963 19487757 ~ 19490733 (-) False zgc:101716
XM_043261247.1 mRNA upstream 225963 19487757 ~ 19490728 (-) True zgc:101716
XM_043261243.1 mRNA upstream 385778 19647572 ~ 19657724 (-) False dpys
TU168710 other downstream 438236 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 438236 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 438236 18815216 ~ 18821088 (-) False rpz
TU168665 other downstream 561008 18693912 ~ 18698316 (-) False LOC122360940
XR_006252818.1 other upstream 155168 19416962 ~ 19421094 (-) False cd22
TU169372 other upstream 905001 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 1180171 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 1180171 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 1390183 20651977 ~ 20653574 (-) True G114901

Expression Profile