RNA id: XM_043260239.1


Basic Information

Item Value
RNA id XM_043260239.1
length 1101
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122359973
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23251560 ~ 23254576 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGAGACTGTACGTGTGAAGCACATGAAACATACTGATCCCAGCTAAGCTGGTTTGCTAACCACCATTAAATATAGACATGAGACATGGTGGAAGACCAGTGATttccaaaaaggaaaaaagactTCCAAACACGTTTGGAGAAAGTTTAAAAGGGAGAGCACAAGACAGACAGTAAAAGTTAGGGTTCTTTCTTTGTAGATCCCAACTCTTAGTGATCTCCAACCTGCAGCTACACTCTTCTCCTGTTTAAAGGAATCAGAAGACCAAGAACAACAACGCGGCAAAGATGTCCAGTTCAACAAAAGTGGTCAAGTTGTTCTATGATGTCATCTCTCCTTATTCCTATCTGGCATTTGAGGTGCTGTGTCGctataaaaatgtttggaaCATCGAACTCCAATTAAAACCGGCATTTTTAGGAGGAGTCTTTCGTGGTTCAGgtAACCAGGAACCTGGACTGGTCCAGAATAAGTTTTGTTACATGGTGACAGACTTGAAGCAGCTGTCTGAGTTCTATGGGGTCCCTGTGAATCCACCTTTGCCCTGTAAAAAAGGTACTTTGAATGTGATGCGTTTTGTGACAGCTGtagctgagaaagaaaaagagagaggtgTGCTGGTGGAAAGGGTATCTAGAGAGCTCTGGAGGAGTATCTGGTGCACTCATCAGGACATTACCCATCCTGCCTTACTCACTGAGGCGGGATTAAAGTCAGGTCTCTCAGCCAATGAGGTGGAGGAACTTCTAATCCTTTCCAAATCTCAGCAAATCAAAGACAGGCTGAGAAATGTGACACAAGAAGCACTGGACTATCAATCCTTTGGTCTTCCATACATTGTTTGTCTTGTGAACGGGAAGACTGAGGTCTTCTTTGGTTCTGATAGATTTGAGCTCATAGCCCATCGAATCGgagAGAAATGGGAGGGACCTCATCCTGATCAACACTCCACCTTATGTGTCAGAGAAACAACTGTGCGGCCTTCATTAGAGTTATATGTTTAAACTTCACTTTTTGTGGTAGCTTTGTAAATTTAAGCTCTGTATATCACATCACTGTTCAATAAAAAACGTTCTCAGTTTTCATGAGTATTGTAAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170714 lncRNA downstream 61910 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 83620 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 173690 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 173690 23074303 ~ 23077870 (-) False G115563
TU170681 lncRNA downstream 178110 23072259 ~ 23073450 (-) True G115611
TU170758 lncRNA upstream 71632 23326208 ~ 23327893 (-) True G115669
TU171122 lncRNA upstream 561321 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 562324 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 565943 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 565943 23820519 ~ 23821387 (-) False G115914
XM_043261565.1 mRNA downstream 1763 23244256 ~ 23249797 (-) True styk1b
XM_043261575.1 mRNA downstream 17772 23224070 ~ 23233788 (-) False rap1gapl
XM_043261574.1 mRNA downstream 17772 23224070 ~ 23233788 (-) True rap1gapl
XM_043261105.1 mRNA downstream 30209 23209559 ~ 23221351 (-) True rbfox1l
XM_043261106.1 mRNA downstream 33355 23209559 ~ 23218205 (-) False rbfox1l
XM_043260403.1 mRNA upstream 3427 23258003 ~ 23261954 (-) True LOC122360080
XM_043260092.1 mRNA upstream 9710 23264286 ~ 23266472 (-) True LOC122359881
XM_043260897.1 mRNA upstream 52118 23306694 ~ 23314761 (-) True cnot3a
XM_043260512.1 mRNA upstream 84875 23339451 ~ 23348014 (-) True kpna5
XM_043260514.1 mRNA upstream 103897 23358473 ~ 23361374 (-) True rwdd1
TU170599 other downstream 317593 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1162506 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1283025 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1447756 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1546601 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 265232 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 333609 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 415322 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1072131 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2413243 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile