RNA id: XM_043260270.1


Basic Information

Item Value
RNA id XM_043260270.1
length 1032
RNA type mRNA
GC content 0.44
exon number 5
gene id cd79a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16402969 ~ 16405653 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGATACAGGAAGGGAAGACAAACACTTGAACGGCACATTTGCTAATGAGCAGCAAGAGGGTTTTTAAAAGTGTTCTGGTTTCTTAGAGAAAATGGCATTCTCGCTGGTTATCTTGTTGAGTTTCTGGGGAGCTGTTGCCAGCAATGTTTTTGACGACCTGACACTGGAGGCAGATAAGCCATTGGAGCGCGTGGCTTTCTCAGAAGAAGCCACCGTCCGCTGCTGCTACCAGTGGGATAGACCTCACAATTTCACCTGGATTGTGAATATTCACAACACCAATGGTATCATAAGGCCTGTCTTAGAAAATCTGCTCAACAAGTCAGACACAGGGACAAATGGAGCCACATGCCATTCGTTAGTTTTCAAGAGTGTCCGTATCAATGACACCGGCTTGTACCAGTGTAAACTGCATTCTAACTCTTTTCACATCTATACCCATGGTACCTTTCTTCAAGTCTACAAACCTTTGGAGAAGACCTTGAACCTCAGCGAGCGTGTAAAGAACAGCATCATTACAGCAGAAGGAGTGTTgctgctgatgtgtgtgttgaTCCCTGGCACCGCGATGCTCTGTAAGACAAAGAAGCTGAAGGAACTTGAGAAGAAGAAaggaagagaggaggagaacaTCTATGAGGGTCTAAACCTGGATGACTGCAACTCAGCTTACCATCAAATTCAACGCACCAGTCAACAAGGCCCCTATCAGGATGTGGCCAACTGTACAGAAGACATTCAGCTGGAGAAGCCGTAGAGGAACAGGAAAAGGAATGcgggaaaaaaaatgtcaagggAAAAGTGAACTCTGTTACTTGTGCTAAAATGTAAAGTCGTGATTACATGAGCCTGCTTTCAGTATGTCTTTGCATCTCTTTGCTAGTTTGAAGATaagcttgtttgtgttttgcattGGTGAATCAAACATGTCTGCTAATGGTTTGAATGAATTGTGTAAAACGTGTGACATTTTAAGTCTGTCCTGAGGAAtgttccaaataaataaatccactgGATACTCAAAGTCGA

Function

GO: NA

KEGG:

id description
K06506 CD79A, IGA; CD79A antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167358 lncRNA downstream 45346 16352270 ~ 16357623 (-) False G113325
TU167360 lncRNA downstream 45346 16352270 ~ 16357623 (-) True G113325
TU167361 lncRNA downstream 45346 16352270 ~ 16357623 (-) False G113325
TU167356 lncRNA downstream 46053 16352270 ~ 16356916 (-) False G113325
TU167286 lncRNA downstream 207073 16194029 ~ 16195896 (-) True G113280
XR_006252836.1 lncRNA upstream 82465 16488118 ~ 16494739 (-) True LOC122360769
TU167382 lncRNA upstream 82948 16488601 ~ 16488822 (-) False LOC122360769
TU167484 lncRNA upstream 146955 16552608 ~ 16553858 (-) True G113405
TU167509 lncRNA upstream 180431 16586084 ~ 16682178 (-) False esrp1
TU167526 lncRNA upstream 183032 16588685 ~ 16589614 (-) True G113433
XM_043260453.1 mRNA downstream 94 16381325 ~ 16402875 (-) True lipeb
XM_043260454.1 mRNA downstream 97 16381325 ~ 16402872 (-) False lipeb
XM_043260456.1 mRNA downstream 196 16381325 ~ 16402773 (-) False lipeb
XM_043260457.1 mRNA downstream 197 16381325 ~ 16402772 (-) False lipeb
XM_043260458.1 mRNA downstream 24959 16360916 ~ 16378010 (-) True tmem145
XM_043260982.1 mRNA upstream 1499 16407152 ~ 16439455 (-) False arhgef1b
XM_043260981.1 mRNA upstream 1499 16407152 ~ 16439455 (-) False arhgef1b
XM_043260983.1 mRNA upstream 1499 16407152 ~ 16439454 (-) False arhgef1b
XM_043260984.1 mRNA upstream 1499 16407152 ~ 16439454 (-) False arhgef1b
XM_043260980.1 mRNA upstream 1499 16407152 ~ 16439454 (-) True arhgef1b
XR_006252795.1 other downstream 163463 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 174503 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 261734 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 389218 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 541076 15857599 ~ 15861893 (-) True G113220
TU167506 other upstream 274544 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 584649 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1951764 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 2086973 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 2086973 18492626 ~ 18520287 (-) False mroh1

Expression Profile