RNA id: XM_043260272.1


Basic Information

Item Value
RNA id XM_043260272.1
length 2206
RNA type mRNA
GC content 0.44
exon number 11
gene id ccne2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21315779 ~ 21321087 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cattcgcaCTGAACACTGCGGAACAGGAGAAAAGCACACCATTTGTTTAGAAAATGTCAAGACGCAGTAGTCGCAACACATTacaagaaagaaatgaaaacgcACCAGAGCAAAATAAACCGCAGAGGAAAAGGAAAAGCGAGcagtGCAATAGAAGAGTACCATCAGCATCTAAGAAACAGCACTATGAAATTCAGAACCGGTGTTTTGAAGGCGATGTTAGTCCCAGCGTGTTAATCGAGACTCCTCAGAAGGAGGTTCATCAGGACGCCGCTAATCTTTCTGGTTTCAAGCGCTTCAGATTCAAGAACCTCTTTGTGAAACCCTCTCCGCTGCCATGCCTCAGCTGGGCCAGTTCAGATGACGTGTGGATAAAGATGCTAAACAAGGAGCTGAAATACGTTCACGACAAGGGCTTTATGCAGCAGCACCCATCCCTGCAGCCTAAAATGAGGTCCATTCTACTGGACTGGCTCATGGAGGTCAGTGAAGTTTATACTCTCCACCGGGAGACTTTTTACTTGGCTCAGGACATCTTCGATCGCTTCATGCTCACTCAAAAAGACATTGGCAAAGATCAGCTGCAGCTCATCGGCATAACCTCACTCTTCATAGCCTCAAAGATAGAGgagATTTACCCGCCGAAGCTCCAGGAGTTTGCTTACGTGACGGACGGAGCCTGCAACGAGGAGGAGATTCTTTCTAAAGAGCTTGTGATCTTGAAGGCGTTGAAGTGGGAGCTCTGTCCCGAGACGGTCATCTCGTGGTTGAAGCTCTACTCCCAAGTGGACTCTTCGAAGGACGATGCTAATTTCCTCGTTCCTCAGTTCTCGCAGGAAACCTACATCCAAATCACGCAGTTGTTGGATCTCTGCATTTTGGACGTTGATTGTTTGGATTTCCAGTACGGAGTCCTCGCTGCTGCTGCCTTTTGTCACTTTACTTCTTTTGAAACGGTCCATAAAGTATCAGGGCTCACATGGGACAGCATATCAAGCTGTGTGCGGTGGATGAACCCGTTTGCCCGAGCGGTGCGTGAATGGCCCAGGCCGCAGCTGAAGGACTTCAAAAAGGTGGCGTCAGAAAGTCGTCACAACGTACAGACCCACGTGGACTACCTGGCCATGCTGAGTGAAGCACATGACCGGCAGCAGGACAGCTTGGATAGGATGTCTCCGCTGGCTGTGGCCGGGATACTGACCCCTCCTAAAAGCACTGAGAAACCTGCTAACGCCTGACGGGTTTGAAGACAACCTTCTGTTGCTAGTCTTTATTTAATTCCATCACAGCCCAGAGATCTAAGAGACCTTCTAGACCAACACATCCAGAGACTTACAGTTGTgtgctgcatttaaatattttttttttttgttggtctgTGGGAAACCAATCCAGGCCGTAACACAACAAACATTCAGACGTTGTGTGAAACTGAGGGAAAACCTACGATTGGTTTCCCAGAGCAGTATTTGAAGCACTCAAAAGTGCCTTCCATTTTGAAGAATGGAGTAATATCTATTTTCTGAAGctagaaatgaaatgttaatgatCTCGGACTGAACCTGCTCAAGAGCTCCTGGCTACGTCGCCAGATCAGAAGTCTGCacagatgctgctgctgcttcgtGGATCATAAGTTACCATTTTATGTgatgtaaatacaatttaattttattgtgtgGCTGTGTGTGACGTGAAATGTGTGTTCTGGATGTTGGCGTTAATGTGGTCCAACGCCAACCCAGTGGTGCTAACTGCGCTTGTTAAACAGGACGAGCCTGTACAACCAGCAGAATCGTTCAGATCCTCGTGAACGTCATTCCCAAGATACTCCTGTAAGACTTGACCGTTTTCACCCCTCAGAAGTGAATTTACCAAACTGAATTTAAgaaaactgcatatttatttcatatagatagatttttcgttttaatatttgaattgcAATTTCGTTCCTCAATGCCAAAggcatatttaataatttgaggTGCTTgctatttatgaatttaaagtCTTCGTTCGTAGCATAGCTTGAATTAAATTTGACCTGGACTCGAGCCGGTGATAGCTTcattgttgatttttaaaaacagtgtaaaaaaaatgtactatgTAATGTACATAAGATGTATATGtgtacaaaataacaatttcaaGACTCTGTAATGTCATTTCCAATGTGAAGTTATTAAAACGTGAAAGAAGA

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169853 lncRNA downstream 1033 21283464 ~ 21314746 (-) True G115042
TU169793 lncRNA downstream 195195 21118149 ~ 21120584 (-) True G114997
TU169792 lncRNA downstream 195239 21118149 ~ 21120540 (-) False G114997
TU169735 lncRNA downstream 480544 20781803 ~ 20835235 (-) True G114947
TU169727 lncRNA downstream 546692 20768744 ~ 20769087 (-) True G114943
TU169865 lncRNA upstream 9925 21331012 ~ 21331358 (-) True G115051
TU169954 lncRNA upstream 67728 21388815 ~ 21389147 (-) True G115098
TU169974 lncRNA upstream 284893 21605980 ~ 21614179 (-) False cenpw
TU170024 lncRNA upstream 504111 21825198 ~ 21825437 (-) True G115155
TU170039 lncRNA upstream 552739 21873826 ~ 21874051 (-) True G115170
XM_043262084.1 mRNA downstream 146375 21167981 ~ 21169404 (-) True LOC122361118
XM_043261888.1 mRNA downstream 169702 21139170 ~ 21146077 (-) False dek
XM_043260869.1 mRNA upstream 1824 21322911 ~ 21329991 (-) True tp53inp1
XM_043260618.1 mRNA upstream 12563 21333650 ~ 21346600 (-) True nagpa
XM_043261010.1 mRNA upstream 39706 21360793 ~ 21365201 (-) True LOC122360424
XM_043261819.1 mRNA upstream 84176 21405263 ~ 21408968 (-) False cfap418
XM_043261820.1 mRNA upstream 84541 21405628 ~ 21408967 (-) False cfap418
TU169801 other downstream 298674 21012607 ~ 21017105 (-) True G115003
TU169673 other downstream 662205 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 863329 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 863329 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 1148165 20166795 ~ 20167614 (-) False G114715
TU169949 other upstream 54803 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 87857 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 88873 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 89204 21410291 ~ 21411772 (-) False mettl6
TU169979 other upstream 239134 21560221 ~ 21561060 (-) True G115116

Expression Profile