RNA id: XM_043260274.1


Basic Information

Item Value
RNA id XM_043260274.1
length 2793
RNA type mRNA
GC content 0.50
exon number 2
gene id sp8b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12035907 ~ 12040947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGGTGGAGATCTTGTCTGAAGTGCTCTGTCGATGACCTCACGCTAGAATGTGGCCGCGTGAAGGTACGGCTCTCCCTGATTGGTCGCCCGTGTCACAGCGGCACTTCAAAGCCGTGAGAGGAGCTACAATTGTGCTGGAATGGGCGGACCACATCATTGTATTGCACACCTCTAAAAAAACAGTGCTCtgattcataaatataaaaagatccTCTGAGGAGGGCACTTTTGTGATGGCAACTTCACTTCTAGGGGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGCAACAAAATCGGGAGCCCGAGCCCTTCTCCTTCCTCTATTTCGGATAACTCGTCTTCGTTCGGAAAGGGATTCCACCCGTGGAAACGAGCGGCGGCCAGCAGCTGTAGTTTGGGATCCAGTTTATCCTCTTTCGCTCGGAACGGCGGCGGTTTAAGCGACTCTTTCGGCACGAACACTTCCACGGGATCCAGTGCCTTTTCCTTAACTTCTGGTACTTCATCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGGCGTCGGTTTCCAACAACTCCCAAGAGCCCAGCCACCAGCCCATGTTTATTTCCAAAGTGCACACGTCCGTGGACAGCTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCGTACGAGTCGTGGTTCAAGTCCTCGCACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCTGCGTGGTGGGACGTGGGGGCCGGCTGGATCGACGTGCAGAACCCGAACGGAGCCGCGCTCCAGACGTCCCTTCACTCCGGCGGGCTGCAGACTTCCTTGCACTCTCCTTTGGGGGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTTAGCACCAGCGCGTCCCCGCACCTGCTGACCACCGGCCAGCATCTCATGGACGGATTCAAACCCGTGCTCTCCTCGTACCCGGACTCCAGTCCCTCTCCCCTGGGCGGAGCGGGAGGATCCATGCTGACCGGGGGTCCGACGGCCTCGCTGGCGGGATCTCCGCGGTCCTCGGCGCGGCGCTACTCGGGCAGAGCGACGTGCGACTGTCCGAACTGTCAAGAGGCGGAGCGCCTGGGTCCGGCCGGCGCGAGCCTCCGCAGGAAAGGGCTACACAGCTGTCACATTCCCGGCTGCGGGAAAGTGTACGGCAAAACGTCGCACCTCAAGGCTCACTTGAGGTGGCACACCGGAGAAAGGCCGTTTGTGTGTAACTGGTTGTTCTGTGGGAAGAGGTTCACGCGCTCCGACGAGCTCCAGCGACATTTACGCACGCACACCGGCGAGAAGCGCTTCGCTTGTCCCGTGTGCAACAAGAGGTTCATGCGGAGCGACCACCTCAGTAAACATGTCAAAACGCACAGCGCCGGAGGCTCGTCGGGGTCGGGCTCCGGGGCGAGTGGAGGGAAACGAGGGAGCGACACCGACAGCGAGCACAGCGTGCCCGGCAGCCCCTCGTGCCACTCACCCGACCTGTTGCAGCCTCCCGAGTCCGTCCCGACGACGGGCATGAACGGCCGCGCGAACTCCCTCGATTAATCCCGCTCAGAATGCACGCGCGCGAATCTCGAAAAGGACCAGAAACTTATCTGACGGTTCGCAAAAAGGGTTGTGCTGTTCGGTCGGTAACGCTTTGTAAAAACTTTCGACGACTCCACTTGTTAGCAAACACCAGTTAGTTAATGCGCATCCGATCGCGAGCGTCCCGCGTGAAACAATGCAAACCAAAGTTTCATCTCTTTTTTCGAGCCATTCGAGTGTGCATTAACTAATTTTTCCGTCGAGCTTACAGTGAAAGTTTTTATGAAGCGTCACCTGGTGAAATAAACCGCGTGGCCATTTCACTCGGATGTTGTAAAGTGATTCAATTTAcgattaaaatgtaatttacaatgAAGTACGCCTGTTTTTGGTCTGCATAGATTCTACGTGACACGAATTTGGTAAAGTAGGGGGATATTAAAAAGGACATCATTCTGATTTGTCGAATAGTCTTATTTTACTTACTGTTGTTACGAAACAGCgggggaaaaaatgtattttacccATCAGTGAAGTGGCCTGTCATTgctaactttttgtttttctcaaaacCAAACTGTGGCACTTTATTCACGAACACTACTAAAATCCAATTTCGTAAGGATAAATTGCCGTAGTGTCGAATAGACTTCGTTTTGTCATTTACGAAttcttcatttctttaatattcGAAAAGATAGTCTATATATCGCACATTGGTCTTTGTCGAAACTGCAGACTACGAATCCTAAGTTTGTATGAAATGTACTTATTTCTTGTTGCTGCAAACGAATGTAAATATcgagaataaaatagaatagactAGAAGGGTTATTCCACACTGATGTAAAACTTGGGTATGTATTTGTTCGAGGCGCGAATTTTTTGAATAGTATTTTTAGTTGCATATATTGATTCTAGTAAATATCCAAAACTGTACGGGAGtgtttttgtgaagaaaaacGTCATATTTATCCACGagttggacttttttttttttttttttttttttttttttttggaggtcTGTCATAGACGCACTTTGATATGATTTGTAAGATTTAAATTCAGAATTCAGTGTTTAATCACGTTTTCTAATTTATGTAAGCATGCAAATGTAAGGTGAGCGTTTATTTCACATCGTTCATTTGAGAAAACCGGCTTTCTAATTTAAGCCACTCAATAAAGTCAACATGGATTCAGCCACA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
K09198 SP8; transcription factor Sp8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164845 lncRNA downstream 781 12032593 ~ 12035126 (-) True G111680
TU164826 lncRNA downstream 52261 11983379 ~ 11983646 (-) True G111668
TU164819 lncRNA downstream 91952 11942364 ~ 11943955 (-) True G111661
TU164803 lncRNA downstream 168592 11865680 ~ 11867315 (-) False LOC122361049
TU164789 lncRNA downstream 216129 11818459 ~ 11819778 (-) True G111639
TU164863 lncRNA upstream 36523 12075597 ~ 12076159 (-) True G111688
TU164864 lncRNA upstream 37379 12076453 ~ 12077007 (-) True G111689
TU164865 lncRNA upstream 41578 12080652 ~ 12080853 (-) True G111690
TU164891 lncRNA upstream 98387 12137461 ~ 12137772 (-) True G111712
TU164892 lncRNA upstream 100103 12139177 ~ 12139530 (-) True G111713
XM_043261777.1 mRNA downstream 22963 12007457 ~ 12012944 (-) False macc1
XM_043261778.1 mRNA downstream 23202 12007457 ~ 12012705 (-) True macc1
XM_043261680.1 mRNA downstream 35000 11999570 ~ 12000907 (-) True tmem196b
XM_043260328.1 mRNA downstream 48457 11985634 ~ 11987450 (-) False twist1b
XM_043260841.1 mRNA upstream 116696 12155770 ~ 12203088 (-) False rapgef5b
XM_043260840.1 mRNA upstream 116696 12155770 ~ 12203088 (-) False rapgef5b
XM_043260838.1 mRNA upstream 116696 12155770 ~ 12203088 (-) True rapgef5b
XM_043260393.1 mRNA upstream 169031 12208105 ~ 12214349 (-) True si:ch211-254p10.2
XM_043260341.1 mRNA upstream 177782 12216856 ~ 12226949 (-) True slc6a19b
TU164609 other downstream 624130 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 749475 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1152696 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1169479 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1287607 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1614986 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2195480 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2870251 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3429406 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3429406 15468480 ~ 15496375 (-) False rps19

Expression Profile