RNA id: XM_043260290.1


Basic Information

Item Value
RNA id XM_043260290.1
length 2723
RNA type mRNA
GC content 0.51
exon number 12
gene id vsig10l
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25735523 ~ 25745044 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actccTGCCTGCTCGCGGTTTTCGTGCAGCTCAAAACTTCTTAAAACTACGAGAAATCACATTCAGCATGTGTTTGCGATCGCACTGGAAGAGGACAGACGGTCGTACCTGTTATTGATCGATGGGTCTGAAGTGACTGATGGGATGTTTTGTCCAGGTGAAGCTCACCTGCGCGGTTGATTTCTCACCTGTCCGTTTTAGGAGCATGACTCCCGTCATCAAAATTAAACCTCGGACAAACCTGCAGGTTTAAGTTTGGGTCTGGCGAAATGCAGACGCCGTTTGGTTTGGTTTATGTTCTTTTGCTCTTCGTTACAGGCAGCGTGTGTTATCTGAGCATCTTACCCAAGGCTCCTGTGTCGGTGGAAGCTCTGGTGGGCCAGAATGTGACCCTCGGTGTGTCTCACGCCGGCGTCCCTCAGCCCGAGGTCATGTGGTTTAAGGGAAGCCTTCTGGTGGCCAGGTGGACCGTGGGTAACGGCTCTCTTTCGGGTGTCGCATCAGGCGTTTTTAAACCAGAACTGAACGGATCGCTCACCTTCATGAACGTGCCGCTCGGTTATAACGGTACATACACCGTAGAAATGAATCATATTGGGGAGGAAAAGGTCAGCGCTACATTTAACCTCTTTGTTTATGACGTGATCACGAATGTGTCCCTGCGCAGCGATCCAGGAGACGCCGTTGAGGGTGAAGCGAGGTTTACCTTGTATTACAGCACACTGCAAGGGGAGGCCAAAGAGGTGCGGTGGTTCTTTAATGGTCTCCAGTTACGAAATGGATCTCGTTATTCCATCGGCGGGAAGAACCTCACGGTAAACCAGCTCGGCAGGAACGACACGGGCCGCTACGCCGCGTCACTAAGCAACCCGTTCAGCTCCGAGACGCAGGGCAGGAACATCACAGTGCTGTATGGACCCGATAGGCCGGTTCTCAAGGTCAGTCCCACAAAAGCGCTCTTTGTTTCGGGagagtctctgtctctctcctgtCAGGCCGAGGGTGAACCTCCCCCCTCCGCCACGTGGTTTTTCAACGGCGAGTCCGTCGCACCGTCTTCAACGGGAACAGTCGTTCTCAGCGACGTTAAGACGAGTCAAAGCGGCATTTATACCTGCGTGATGATCAACACCAGAACTGAGGTGACGCTTCAGAGGAACATCTCTGTAATTGTCTACGAGCCTCCCGGAGGTGAGCCGCTGTGTTCGGTGCGGGCCGTGAACGGAGACGCTGCAGCGCTGCAGTTCCTCTGTCTGTGGCCAGGCGGCGCTCCGGAGGCACGCGTGTCCTTTCCAGGCCTGAGCGTGAACGCCAGTGGGTACGGGAATTACAGCGTGACCGTAAATGACATTCAGAGCTTAAACGGACGAGAAATCATCTGCGAAGCCGAGCATCCTCTGATTCGGACGCAGTGCAGCGTCATTCCTCGTGGTCCTGTGGATTTTCTCCCAGTAATTTTAACCAGCGTGAGTCAAGATGAACAGACGATGGTTGTGATTCGATGCTCTGCTGAAGCGACACCTCAAGCCCTTGTGCAATGGATCAAGAACGGACACCGCTTGCAAACTGGGCCCAAATATCAGATCAGTACAAACACAACTCGGCTGATAATTTATGGTTTTAATGTCACTGCAGACCTCGACACGTACACCTGCGCTGCCATCAACCCTCTCGGGAATAAAACGGTGGACACGACGCTGCTGGgtCCTCAAATCTCCAATTCGAGTGTTTCCCTGAGTATCAACCGAACAGAAGTGACCCTATCATGGGTCGTTCCTCTCACTTCTGTTATTACAGGCTTTGATATCCAGATGAAAGGACCGGAGATCTCAAGCCCATCTCAACCCAAACTCGGCATCGCTTCAGACTTCCTCACCGTCCAATCAGAGCCTGCCTCGGCCAGATCCAGCACGCTCTCAGGACTCAACCCAGAATCCACGTACTACTTCAGAATCGTCCCTAAAGCCGGAAGAACCGCAGGAGAACAGTCCGAGCAGCATCGGATCGGACCAGCTGCTGGACTCAGTGGAGCTGCTATCGCTGGTATCGCTGCTGGAATCCCCTGCgctctcctcctcatcctcattgTGCTGGCCTTCATCTACTGCGGCAGACGTGATCGAATCCCCAGGTATCCTGTATCGAGAGCAACAGAGAAGGCCGTCATCTCTCAGTCTGCTCTGAACCCTCACCGCCTGCTGAGAGCCAGACTGAAACCACCGCCGGCGTACAGACTTCAGCAGCCCGAGCGGTCTTCTCCTTTGCCGTCTGAGAACTCGTGTGCGAGAATGGCCACCACCGTCTGACTCCGAAAGCCTTTAAAGGTGTCCAGGACATTTGTTCGACACGTTGCAGCCCGGACTCGAACCAGTGCCACTCACGTGAGCACCACAGCTGCTCCTGCACCGTTCATTTTTACAAGTGTGTTTTAAATTGCCAGCGCTGTATGAAAATGACCGTTTCTGTAgcttcttttaaaataagtagtgattttgaacgcttttattcagatttaacATTCGTAATGATCAGAAATGCAGGAAAAGTagtaatgacgctgaaaattccgctttgcattaaaggaataaattacgttttgcaatatattcaaataaaaaacagttatttgaaattgtaataatatttcacgattTTACTGCTTTTGCAGAATTTTtgctcaaatatatatatatatatatatatatatatatatatatattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171627 lncRNA downstream 24837 25708114 ~ 25710686 (-) False LOC122361130
TU171631 lncRNA downstream 28727 25704700 ~ 25706796 (-) True G116247
XR_006252861.1 lncRNA downstream 32989 25668360 ~ 25702534 (-) False LOC122361130
TU171683 lncRNA upstream 31692 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA upstream 32788 25777832 ~ 25778404 (-) False G116282
TU171795 lncRNA upstream 275481 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA upstream 317247 26062291 ~ 26069534 (-) True G116350
TU171803 lncRNA upstream 326116 26071160 ~ 26128626 (-) True G116359
XM_043261514.1 mRNA downstream 1941 25731193 ~ 25733582 (-) True lim2.5
XM_043262091.1 mRNA downstream 6858 25712911 ~ 25728665 (-) False nek10
XM_043262090.1 mRNA downstream 6858 25712911 ~ 25728665 (-) True nek10
XM_043260186.1 mRNA downstream 108424 25568531 ~ 25627099 (-) False znf385d
XM_043261884.1 mRNA upstream 1521 25746565 ~ 25752100 (-) True etfb
XM_043260361.1 mRNA upstream 339730 26084774 ~ 26088904 (-) True LOC122360054
XM_043260356.1 mRNA upstream 346334 26091378 ~ 26103408 (-) True si:ch73-90p23.1
XM_043260355.1 mRNA upstream 346334 26091378 ~ 26102780 (-) False si:ch73-90p23.1
XM_043260359.1 mRNA upstream 346334 26091378 ~ 26096909 (-) False si:ch73-90p23.1
TU171647 other downstream 59113 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1407550 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2060225 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2125682 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2211141 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 634628 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1062076 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1065273 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1065273 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 1065273 26810317 ~ 26812974 (-) False G116632

Expression Profile