RNA id: XM_043260336.1


Basic Information

Item Value
RNA id XM_043260336.1
length 1412
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122360041
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16557546 ~ 16560034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACGCGCCGCGCCTCGCGCACGTGATACACGCGTTCGCTGAGGACGAGCCTGATGAGCGCGCACCCGTCGTCATCATGGGAAGTAGTGTTTTCAGCGGAGGAGAAGCAACTGAGGAGAATGTCTGAGGTAAATGCTCCCATTGAAAAAGTCTCTATAACAGCCCTAGAGTCTGAGACTCCGCCCTTAAAGTCAGATACAGGGCCTGTGATTGGTGGACTGCGTTTGCGCTCTGCACCAGGGGCTTGTTTGTTGTTTGCGGGTGTTTTGCTGATAGTTGGAATCGGCGTCGCTGTAGGGGGGTACTGGAACAGTCAACCCCGCAGACAAACACCACATCATGCTTCAACTGGACGCACCTCTTCAGAGAAACTGAAGCTAATTGGTCCTGTCATTATGGGGGTGGGGcttttcatctttatttgtGCCAACACAATTCTCTATGAAAACCGTGACAGAGAACAACGTCATAAGCGAGACCATCAAAAACACGACCAGGAGATCCTAACACTGGTACAAACCCATCGGAATAATCATTCAAAGCAGTTCCcacacacagaaatgaaaaccAGCACACATACATTGGACTTGTCCGAATTCAACATCCATTGCTTAGAGGAAGGGGACGGAATTCCCACCCTAAAGTGTTCTTTGCCTTCCTCTGGCTCATGTAGCTCTAGTCAAGTGAACCTGGAAACCGGATCACCCCTCAGAGTACGCAGAAACATGGAAAGACTGGCCTTGCCTGTCATTAAAGTCAATGACTGCCTGATTTGCTCCTCAGACCCGGTGCCTCCACCTCTCCCTGATCGGACATACATGAACAAGATGGGAAAAGTGGAAAACACAGCAAACGTGGAGCTAACACAAGTGACTCTTGCAGAATCATCTCTAATGATATTGAACAAAGAAGAGCCAAAGGATCGGTAGGCTTAGTCCACATTAAGGttcatataatgcatatattgaatatattcaGGCCAAGAGATGTTAGAGTTTAATACGATTTCTCTATTTGATTTTGATTCGATTCTGATTCATTTGGGTGTATTTCCATTATAATGTCCAATTTGATTACAGTTCTTTCTCTGCTCCTGCTATAATGTTTCAGATGGATTCAAGCTAATCTTTTTGAAGCCACtctttgaatgaatcagcttCACTGTATGGTTTTGAATCACCAAAAAGATTTGTTTGCTAATGGTCACGTTTGtctgtttatgtaattttatgttGTCACACTGCTGTACTTAGTCTTTTTTATTACATCACGGTATACAGAACTCCAATTTAGCTTAACCGTTTTGGTAAACTCTTTTCTGAGAGAAATAGACGATTTTCATGTACGTGgatgaataaatagaaattagttttctttttgatgttttcaaTGAATCTTCCCTTGCATTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167484 lncRNA downstream 3688 16552608 ~ 16553858 (-) True G113405
XR_006252836.1 lncRNA downstream 62807 16488118 ~ 16494739 (-) True LOC122360769
TU167382 lncRNA downstream 68724 16488601 ~ 16488822 (-) False LOC122360769
TU167358 lncRNA downstream 199923 16352270 ~ 16357623 (-) False G113325
TU167360 lncRNA downstream 199923 16352270 ~ 16357623 (-) True G113325
TU167509 lncRNA upstream 26050 16586084 ~ 16682178 (-) False esrp1
TU167526 lncRNA upstream 28651 16588685 ~ 16589614 (-) True G113433
TU167532 lncRNA upstream 46680 16606714 ~ 16607680 (-) True G113439
TU167571 lncRNA upstream 119650 16679684 ~ 16680112 (-) True G113470
TU167574 lncRNA upstream 133896 16693930 ~ 16694290 (-) True G113473
XM_043260736.1 mRNA downstream 17933 16514357 ~ 16539613 (-) True megf8
XM_043260096.1 mRNA downstream 43575 16508483 ~ 16513971 (-) True LOC122359884
XM_043260391.1 mRNA downstream 78503 16439901 ~ 16479043 (-) True erfl1
XM_043260390.1 mRNA downstream 79109 16439901 ~ 16478437 (-) False erfl1
XM_043260389.1 mRNA downstream 84002 16439901 ~ 16473544 (-) False erfl1
XM_043260003.1 mRNA upstream 1665 16561699 ~ 16568983 (-) False l3mbtl1b
XM_043260005.1 mRNA upstream 1667 16561701 ~ 16570438 (-) True l3mbtl1b
XM_043260002.1 mRNA upstream 1667 16561701 ~ 16568983 (-) False l3mbtl1b
XM_043260004.1 mRNA upstream 1668 16561702 ~ 16568983 (-) False l3mbtl1b
XM_043260035.1 mRNA upstream 11332 16571366 ~ 16575436 (-) True sgk2b
XR_006252795.1 other downstream 318040 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 329080 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 416311 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 543795 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 695653 15857599 ~ 15861893 (-) True G113220
TU167506 other upstream 120163 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 430268 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1797383 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 1932592 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 1932592 18492626 ~ 18520287 (-) False mroh1

Expression Profile