RNA id: XM_043260355.1


Basic Information

Item Value
RNA id XM_043260355.1
length 2671
RNA type mRNA
GC content 0.42
exon number 3
gene id si:ch73-90p23.1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26091378 ~ 26103408 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTTTGTGCCTTCTCTGCCCTACTTCTACTGCAGCAAAAGCTGCATCTGTTTTTAGCCTTGCAACAGCATCTATAAAGAGCTCATCTATCTTTCCTGTGGCAGAGGTGTCTGAAACAACACACACTTTCCTGTTGCATGATACAGATAGGGGGAATCCAGGAGACAGAAGGTCATATATGATTGAAAAGACACGAAGGTGTGCATCATCTACATCGACGATGGCGTGGACGGTGGCTCTGAGTAACCTGGTGTTAGGGGTCTACGGATTCACGCTGATCACGGGCCTTCCCGCCAACGTCTTGGCTTTCTACACCTTCCTGCAGAAGATCCGCCAGCGCTCCACCCCGATAGACGTGCTGCTGCTCAGTCTAACCGTCTCCGACCTGATCTTCCTCTTTTTCCTGCCCTTTCGCATGGTGGAGGCGGCCAACATGAAATGGACGATGCCTTACTTCCTCTGCCCGCTGTCGGGATTCATCTTCTACTCCACCATCTACAACAGCACCTTCCACCTGACGGCCATCAGCGTGGAGCGCTACCTGGGTGTGGCCTTCCCCATTAAATACAAGCTCAAGCGCAACCCTCGAAACGCGGTGATAGCCAGCGTCGTGTTCTGGGTGTTTTCAATGGCGCACTGCAGCATCGTCTACATCATGCAATACCACGACCATTCGAACCCCAACTTCACCGATCCCTCCAAACGCAACACCTGCTACGAAGAGTTCAGCGCTGAGCAGCTCAAGATCCTCCTTCCAGTTCGCCTGGAGCTTTTCGCGGTGCTCTTCGTCACGCCGTTCCTCATCTGCTGCTTCTGCTACATCAAATTCATCCACATCCTCTCCAATCTGCCCAACATCAACGCTAAGAAGCGGTACAGAGCCATCGGGATGGCGCTGGGCACGCTCCTGGTCTTCATTATCTGCTTCATGCCTTATAACGTCTCGCACGTGGTGGGATATGTGGGCAACTACAGCCCTGACTGGCGAGTGTATGCGCTGCTCACCAGCACGTTTAACGCGTGCCTCGATCCCTTCATATTCTACTTCTCTTCTTCAGCGCTCAGAGGAACTTTCAAGAACGTCTTCCAGGAGCTGTCGAGGCGGCTTCTCACGCCCTGCTGCCGCTCGGTTCTCTACTGCCCTCTCTTGAACTGTTCGAGCACAGAGGAGAAAACTCAGAGCACGACCGACAGCTCTCTTTAGCATCTTGGAGTTCGATTCGAGTGACTCTCGAAATGTGACTCAATTTCAGAAAAGCAACAGAAGAGCACCGTATGGGCCGGCGTTTTTCAGTTGAACGTAATTGCGATGGGCAGCTTAATGGACCACTATTATTGCACGCATTTTTCCCATTCTTTTTTCCAtagggattttttaaaaaaccatgTCGAACCAACCAGCTATGAGGGTGATtacaaactttgatttgaaacaaaataactaaaagggTACAAGATCGAACGACTTTGTAAAGGGAGAACTGCCATGAAgcatgaatataaaatgttatatatgtaaatgtatagagatatatatgtatgcataattataatttgttgttttgataGCAGAGTTAGTCTTCATTACGTGATTTGCAGTGTTTCGTGGGAGTTATTTGAATGATATTTGCTCACTTGACTCGCCGATTGGTGGACTTTTCTATACAGCATCATGggtttatatagttttttgctacagattcagttattttaaaaataagcattatttAACAACCTTGTCACAACAGTTCTATCTATGGTTTATAAGATATcattcaaaatgagtttttctatggagaaaatgaacgGGGTTTTACTTCTGGAACCCCACCATTGCACGCTATAACTTATACTTATCACTTTTGGGTCTGTTGGGGTTCAACGTGTCCTCGACTTAGACTTTCTGGTAAAGCTAGTTGACCTTGCATGTCTTCCTGGTGAAGCAGCCTAAAGCGGGcatgtttttaatgcactgtCTCGTATTGATCCTAATGGGAAATGCTCAAGCAGGTTTATTGAGTGTTTTCTGTCAGGATCAGTATCATTATCAGGTAAATGCACCTTCAGGGAGCTTATGCTGTCTTTGAACTGGGCTTTCAATGTGAAGGGTGTCATTTGTGCAGCACTAGtggcaaaaaatataataatgacatttcaCTTTTTCTCAAATTCACAGCATTGGTTGATCCAGTGTTATATCCTGCccattttttcctcatttctctttataattaaagtttttgtaaaTCGCTTCTGCTGCAGCATAAACATCATTGCATAActttagatacatttttctatttttttttttatcatttttctgatattttgctttcatcatttaaaatctttattgaTTATTTCCcctttatgtttaatgtttaggTGAATTTtaaccctttattttcatttgacgcgttcttttattaaattagtttcATATCTAAGTTTATATTACAGTCTttgatgtaaatatgtaatCGTTGAATTGTTGTTAATTTTATGAAAGAGCAGATAAGATAAGCTTTTTTTGGATCCGTAGtctaagcactttttttttttctcacggTTAGAAAAACACTTGATGTGTCATTTCCACCGaataaaaatttgcaaaatgtaCTATGAAGTTATTAATGAAGTAATGCAATAAAcgttttttcaaatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171795 lncRNA downstream 18372 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA downstream 21844 26062291 ~ 26069534 (-) True G116350
TU171683 lncRNA downstream 312974 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA downstream 312974 25777832 ~ 25778404 (-) False G116282
TU171627 lncRNA downstream 380692 25708114 ~ 25710686 (-) False LOC122361130
TU171825 lncRNA upstream 2237 26105017 ~ 26230073 (-) False G116368
TU171826 lncRNA upstream 2237 26105017 ~ 26280057 (-) False G116368
TU171827 lncRNA upstream 2237 26105017 ~ 26230073 (-) False G116368
TU171828 lncRNA upstream 2237 26105017 ~ 26282857 (-) False G116368
TU171830 lncRNA upstream 2237 26105017 ~ 26230073 (-) False G116368
XM_043260361.1 mRNA downstream 2474 26084774 ~ 26088904 (-) True LOC122360054
XM_043261884.1 mRNA downstream 339278 25746565 ~ 25752100 (-) True etfb
XM_043260290.1 mRNA downstream 346334 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA downstream 346334 25735524 ~ 25745044 (-) True vsig10l
XM_043261514.1 mRNA downstream 357796 25731193 ~ 25733582 (-) True lim2.5
XM_043260360.1 mRNA upstream 764 26103544 ~ 26107754 (-) True LOC122360053
XM_043260354.1 mRNA upstream 5089 26107869 ~ 26120740 (-) False si:dkeyp-97a10.3
XM_043260353.1 mRNA upstream 5089 26107869 ~ 26120740 (-) True si:dkeyp-97a10.3
XM_043262041.1 mRNA upstream 31468 26134248 ~ 26173373 (-) False LOC122361084
XM_043262040.1 mRNA upstream 31468 26134248 ~ 26173373 (-) True LOC122361084
TU171647 other downstream 414968 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1763405 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2416080 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2481537 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2566996 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 276892 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 704340 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 707537 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 707537 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 707537 26810317 ~ 26812974 (-) False G116632

Expression Profile