RNA id: XM_043260368.1


Basic Information

Item Value
RNA id XM_043260368.1
length 4148
RNA type mRNA
GC content 0.39
exon number 5
gene id has1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15799086 ~ 15804702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgcctggttacaaactttcctTTTACTACATTGTACCACAAGAGGGCAACATATTCTGTTTTTAAGGCAGAGGAGTCCTTGGAGCTATATTGTTCTTTATTCAGCTATTTCATTTACCAAAAgcgcaaacaaaacaaactgaaaaggcaCAAATTTATTGGATAAATTTACAGTATTGATGTTTCTATGAAACAATCACGAGGGCAAGGGGTACGTTTTCTTTCTCACTTCACACCCTCCTGTTGTCTTGATAAAATACTGTAACAGTGAGCAATGTCATCACTGACGAGCCcacaatgcatttataaagtTAAACATGCAACTTACaaaattaagaaagaaagaaagaaaaagaaaataaaaatggaggAAATATGGAAACAGGAACACAAGTTCTCAGATAAAAAACATCAATGTATATTCTTATGTTGTTAGATCAAGAGGAGAAGTCCTCTTAGTTTTTCaccacatatatacatacaaatcaTATAGAAGCTGGATTTCAATGCATAAcaatccattaaaataaagGTACCAGcgatttttagataaaaatttCACCTGTGTGATCAGATTATCAAACGTGCACACCTCGTGAAACATGACTATTCTGTAAGGCACGTTAAACCTAAACAGAAGAATAAAATCTATAATGACCCAAACTGATGATAGTCATTCATCGTCTGTGTTATGCGTACTGACCCAACAAAAACACCCAGAACATCAGAAAGAGGACTACTGAGTTTTGACGTAGAACGTATGAGTCATGGATGGTCCTGTGGGGCGTGATCTGAGCTCAGAAACATTTGTAGCTCATTACACATCTGGAGAAGGATGTTCCCTGAGCTCAGAGCCAGACTATAAGTTTTTTCAGGTCTTGAATGAACAGTTAGTTCAGGAGGAGAGCAGGTCAAAGAAGGAGTGAACAAACCCAGGAATAGcattttcataaaaaaatggaCATCAAACCAGTATTAAGGAAATTTGCCTCTTTGGTCCGAGTCATTCTCACATTTCTCTTTGCTCTGCTGGTACTTGGGGTGATGTTATGGGCATACATCGATGGTTTCCAGATAGCCACATCTCCATATAACATCATCTCCATTGGTTTCTACGGGGTGCTTCTCAGCATTCATGTCCTAATTCAGAGCTTCTTTGCCTTTGTGGAGCATCGGCGCATGAACGCACGGCACAAACCATGCTCCTACACAAAAACCATCGGCTTTACTATATCAGCCTATCAGGAGGACCCTGTCTATCTCCGCGAGTGCCTTCAGTCAGTACGGGCCCTGCAGTACCCATCTGAGCTGCTACGCATTGTCATGGTGGTGGACGGGAACTCCGAAGATGACCGCTACATGTTGGAGATGTTCAGGGAGGTCTTTGAAGACCAGGATCCTGGCTGTTATATATGGCAAAACAACTACCACTCTTGGAAGCCCACTGGCCTTGACAAGAATGCAGCTGAAGCTGATGGTCCAGACGATGAAGTTGTGTTTGAAGACCCTCAGCGCTTAGAGGTTGAAGAACTCATCAGGACcaagaagtgtgtgtgcatcatGCAAAAATGGGGAGGAAAGAGGGAAGTGATGTATACAGCATTCAAGGCACTAGGATCTTCTGTGGATTATATACAGGTGTGTGACTCAGACACAAAATTAGACCCTCTGGCCACAGTGGAGCTCTGCAAGGTGCTGGAGAGCAACAAGAAATACGGTGCTGTGGGAGGCGATGTGATGATCCTTAACCTTAAAGACTCTTACATCAGCTTCATGAGCAGCCTGCGCTACTGGATGGCGTTCAACATTGAGAGGTCCTGCCAGTCCTTCTTCGACTGTGTCTCCTGTATCAGCGGCCCCTTAGGTCTTTATAGGAATGACCTCCTGCAGCAGTTTCTGGAATCCTGGTACAATCAGAAGTTTCTTGGTACCCACTGCACTTTTGGGGATGACCGGCATCTCACCAATCGAATGCTAAGCATGGGCTATGCTACAAAgTACACTGCCCGTTCTAAGTGCTACACAGAGACTCCCGCTCAGTTTCTGCGCTGGCTCAATCAGCAGACGCGCTGGACCAAATCCTACTTCCGTGAATGGCTGTATAACGCTATGTGGTGGCACAAACACCACCTTTGGATGACCTACGAATCCATTGTCTCAGGcatctttcctttttttgtcaCTGCCACCATTATTAAGCTGTTCTGGACAGGCACTCTTTGGGACATTTTGTGGGTCTTGTGCTGCATCCAGTTGATTGGTCTGGTAAAGGCAGCATATGCCTGCATCTTACGACAAAACGCAGTCATGCTCTTTATGTCATTATACTCTGCTCTCTATATGACCAGCCTCCTGCCTGCCAAATACTTTGCCATTATCACCATGAACAAAAGCAGCTGGGGGACATCGGGCCGTCGTAAGATGGTGGGGAACTATATCCCCTTGGCGCCTCTATCAGTGTGGGGGGCCATTTTGTTGGGAGGCCTGGGGTACACTATCTACAGGCAAAACAATGAGACCTGGACAACAGATGGAAAGAAAGAGGAGATCAAGTTTTTGATATTTGGAGTCATAGCTTATGTGTGCTACTGGCTTGTAATGCTCTGCCTCTACTGGGTGTGGTTTCGGAGATTATTCCGAAAGCGCTCACAGAGTTACACTGTGAATGTATAAGACAATTATTTGggcacattatttatttaggaccacttgcacattttttattggtatttttaaatggtttacatgcaattttatttatagactttttttaacttgcaattttatttatgaCGTTTTTTGATATTGcacatattttatgcaatttatgaTGCCTATAAGTATTCAGAGATCAGAAGTGACATGGAGGCGACCGGTCTTTATGAAATGTAATGACTAGACTATATGAAATGTGCGAAAAGCGATCGTATAGAGTCAGCATTCATAATGTACGTTTTTGTGTACAAAATGTAGTATTGAAACCGAATAATAGGAGTATGTTATTAGTGAGGGAATTTGAACATGGCACATTCATTATTAGCACATCATTGGTTGTTAAACATTATTTGAAgaacataaataaattgataCATAGCTACGCAGTGAGCAGCACTGATCATGTGATATTCATATATTAGGATTTGTTACTTTCAGAATGACTACTAAGAAAAATaggacaaatatttaaaaacaaacaattgtgCAAGAAtttccaaatgtttttattttattttatttttatggcgAGCgttgatttaaaatactttctgaTGATTTTAATTTCTGATATAATGTGACAGggcatttttatgttgtttttttagcacTTGAATAAAATATGTTGAGTATGTATACTTAGTGACAAATACTTTTGGCAGCAATATTGTGTAAATGTGAACTTACAAATGTTGGTTATTTAAACAAtacaagaaattaaataaattattttattaaaatatgctgaattatttcaaacatccaattaaaataactatatgcAGGCAgtataaaagtaaatacattgCACTGCTTTTGAATgtgaatgcttttaaaatgtagacCTAGATTGGAGACAAAATGTGACATTTGTCATtcaataaagtcattttaaaatgataaaacaaaatttacttacattttttataatagcaATGTATATGTAGACTAGGGTGCAACTCTATTCCACAACCTTTGGTCTTTGAATGATTTTACAATCCTTgaacaaaatacagtttaagGGAGGATTCCCTGACATTTgtacctccagaccagcagtgACATAAATCAGTTTGGGTGTCATTTACAGCAAAATCAATAACACTGTAGGATAACAGCCCACAAATAAGTTATGGTTGGCCATAATTGAGCTGTGGGATAATATATGCATGATCAATGCAAAGTAAATGATTTAACCTTTTGTGTGATTTAGAGCATCTTGAATCAGAGGCTGAATCAGAACAGGGTGGGAGTCGTTTGGGGGTAATTGCTTCATTTGTGTTGCACCATGTTTAGACTGTTACCAAAGGCAACCAAGGAGGACCCCAATTACAGAGGCTGAGAATTAAAATTTGTTTCAATAAAACcatcaacaaaaaacaaacagccagAAACAAGGGAAAAAAGCTGAATGTTGATGTCTTTAAAACTATA

Function

GO:

id name namespace
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0050501 hyaluronan synthase activity molecular_function

KEGG:

id description
K00752 hasA; hyaluronan synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167138 lncRNA downstream 35341 15763469 ~ 15763745 (-) True G113187
TU167117 lncRNA downstream 81200 15709738 ~ 15717886 (-) True G113168
TU167130 lncRNA downstream 93027 15705823 ~ 15706059 (-) True G113179
TU167112 lncRNA downstream 126967 15665236 ~ 15672119 (-) False fxyd6l
TU167110 lncRNA downstream 128075 15665236 ~ 15671011 (-) False fxyd6l
TU167205 lncRNA upstream 101531 15906233 ~ 15906830 (-) True G113232
TU167204 lncRNA upstream 102397 15907099 ~ 15908673 (-) True G113231
TU167216 lncRNA upstream 106610 15911312 ~ 15946683 (-) True G113236
TU167209 lncRNA upstream 124520 15929222 ~ 15958664 (-) False G113234
TU167212 lncRNA upstream 135193 15939895 ~ 15958664 (-) False G113234
XM_043260584.1 mRNA downstream 39419 15754181 ~ 15759667 (-) True si:dkey-79d12.5
XM_043260583.1 mRNA downstream 45176 15735273 ~ 15753910 (-) False kcnn4
XM_043260582.1 mRNA downstream 45176 15735273 ~ 15753910 (-) True kcnn4
XM_043262060.1 mRNA downstream 74757 15722112 ~ 15724329 (-) True LOC122361102
XM_043261694.1 mRNA downstream 77963 15719163 ~ 15721123 (-) True negaly6
XM_043260373.1 mRNA upstream 62602 15867304 ~ 15869211 (-) True prss1
XM_043260718.1 mRNA upstream 131945 15936647 ~ 15938890 (-) True lratd2b
XM_043260914.1 mRNA upstream 154967 15959669 ~ 15963708 (-) False prelid3a
XM_043260913.1 mRNA upstream 154967 15959669 ~ 15963708 (-) True prelid3a
XM_043261263.1 mRNA upstream 193610 15998312 ~ 16000648 (-) True rbfa
TU167048 other downstream 302711 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 302711 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 302711 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 303364 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 885440 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 12277 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 52897 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 208262 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 334617 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 413959 16218661 ~ 16228466 (-) False atxn1b

Expression Profile