RNA id: XM_043260373.1


Basic Information

Item Value
RNA id XM_043260373.1
length 949
RNA type mRNA
GC content 0.49
exon number 5
gene id prss1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15867304 ~ 15869211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTTATATAATGAATACCTGTATGTATGCCCTTGAAAATTATCTTAAGCTGTGGAGTAGACAAAGTATAAAAGGTGGGTCTTAAAACCTTCAGAACACACTACTCAGCAGCTTCAACATGAAGGCTCTCATTCTTCTGGCTCTGTTCGCTGTGGCTTATGCTGCTCCTCTGGATGAGGATGACAAGATTGTTGGTGGATTCGAGTGTACTAGGAATGGTGTTCCATACCAGGTTTCCCTGAACAGTGGTTATCACTTTTGCGGTGGCTCCCTGATCACCAACCGATGGGTTGTGTCTGCTGCTCACTGTTACAAGTCCTCTATCCAGGTGCGTCTGGGTGAGCACAACATTGATGTCTCCGAGGGCACCGAGCAGTTCATCAGCTCACAAAAGGTCATCAGACACCCCAGTTATAACAGCAACACTCTGGACAATGACATTATGCTGATCAAGCTGGCCAGCACCGCCTCTCTGAACAGCTACGTTCAGACCGTTTCTCTGCCTTCAAGCTGTGCTTCATCTGGTACCCAATGCCTGATTTCTGGATGGGGAAACATGAGCGCCTCTGGAAGCAACTACCCCAGCCGTCTGATGTGCCTGTGGGCTCCTATCCTGAGTGACAGCACATGCAGAGGAGCCTACCCTGGTCAGATTACCTCTAACATGTTCTGCGCTGGCTTCATGGAGGGAGGCAAGGACTCCTGCCAGGGTGACTCTGGTGGCCCAGTGGTGTGCAGCAACCGGCTGCAGGGTATTGTGTCCTGGGGTTACGGCTGTGCCCAGAGGAACAAACCTGGTGTCTATACCAAGGTCTGCAACTACATCTCCTGGATCAACACCACCATCAACTCCAACTAAGCTCGCCCAGATTTTTTTGAGCCCATAATCATGGCATGTTGCAATATAATTTggcaaacataaaataaacatctgagaacaaacattaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167138 lncRNA downstream 103559 15763469 ~ 15763745 (-) True G113187
TU167117 lncRNA downstream 149418 15709738 ~ 15717886 (-) True G113168
TU167130 lncRNA downstream 161245 15705823 ~ 15706059 (-) True G113179
TU167112 lncRNA downstream 195185 15665236 ~ 15672119 (-) False fxyd6l
TU167111 lncRNA downstream 196293 15665236 ~ 15671011 (-) False fxyd6l
TU167205 lncRNA upstream 37022 15906233 ~ 15906830 (-) True G113232
TU167204 lncRNA upstream 37888 15907099 ~ 15908673 (-) True G113231
TU167216 lncRNA upstream 42101 15911312 ~ 15946683 (-) True G113236
TU167209 lncRNA upstream 60011 15929222 ~ 15958664 (-) False G113234
TU167212 lncRNA upstream 70684 15939895 ~ 15958664 (-) False G113234
XM_043260368.1 mRNA downstream 62602 15799086 ~ 15804702 (-) True has1
XM_043260584.1 mRNA downstream 107637 15754181 ~ 15759667 (-) True si:dkey-79d12.5
XM_043260583.1 mRNA downstream 113394 15735273 ~ 15753910 (-) False kcnn4
XM_043260582.1 mRNA downstream 113394 15735273 ~ 15753910 (-) True kcnn4
XM_043262060.1 mRNA downstream 142975 15722112 ~ 15724329 (-) True LOC122361102
XM_043260718.1 mRNA upstream 67436 15936647 ~ 15938890 (-) True lratd2b
XM_043260914.1 mRNA upstream 90458 15959669 ~ 15963708 (-) False prelid3a
XM_043260913.1 mRNA upstream 90458 15959669 ~ 15963708 (-) True prelid3a
XM_043261263.1 mRNA upstream 129101 15998312 ~ 16000648 (-) True rbfa
XM_043260048.1 mRNA upstream 132102 16001313 ~ 16006471 (-) True adnp2a
TU167180 other downstream 5411 15857599 ~ 15861893 (-) True G113220
TU167155 other downstream 48218 15816979 ~ 15819086 (-) True G113203
TU167048 other downstream 370929 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 370929 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 370929 15492821 ~ 15496375 (-) True rps19
TU167269 other upstream 143753 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 270108 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 349450 16218661 ~ 16228466 (-) False atxn1b
XR_006252795.1 other upstream 363761 16232972 ~ 16239506 (-) False fam8a1b
TU167506 other upstream 810986 16680197 ~ 16682178 (-) False esrp1

Expression Profile