RNA id: XM_043260388.1


Basic Information

Item Value
RNA id XM_043260388.1
length 1110
RNA type mRNA
GC content 0.42
exon number 12
gene id calb1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25179830 ~ 25190749 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACCGGAGACATCACAGAGCACCGTCTCACAGCATCGGTCTCACAGCTTCAGCGCCCGACACACGGAGAAAACATGGCAAACGCCTACCTGCAAGGAGTAGAGATCTCAGCCTCTCAGTTCCTGGATATATTTCACCATTATGACAACGATGGTAATGGATATATCGAGGGGAAGGAGTTGCAGAATTTTATCAAAGAACTTCAGCAAGCTCGAAAACAAGCAGGACTGGAACTAACAGACAAAATGAAGGCCTTTGTGGAGAAATATGAGCAAAACGCTGATGGAAAAATAGGTATCATTGAGCTGGTTCAAATACTCCCTACAGAGGAAAActtcttattatttttcagaCAACAGCTGAAATCCTGTGCAGAGTTTATGGAGGCTTGGAGAATTTATGACGCTGATCACAGTGGATACATCGAAGCTGACGAACTTAAGaattttttgaaAGACCTGCTCCAGAGAGCTAAAAAACCATATGATGAGAAGAAATTAGAGGAGTACACACTAACTACGctgaaaaTTTTCGATTCAAATAAGGATGGGAAATTATGTCTGTCAGAAATGGCACGactgTTACCGGACCAGGAGAACTTTCTACTTAAATTTCAGGGGGTTAAAATGGCCAGAAAAGAGTTCAACAAGATTTTTGAGTTATACGATCAGGACAGGAACGGTTACATGGACGAGAATGAGCTTGACGCCCTCCTCAAAGACCTTTGTGAGAAAAACAAGAAGGATGAAAGTCAACAAAATCCCCGACGTATAAAGAGCGCCATCATGGCTCTGTCTGATGGTGGCAAGCTCTACAGAACAGAGTTAGCGTTGGTGTTGTGCGCAGATGAGATGTGAACACTTCCGTCTGTACACATTATCCCAGAACCCCATCCTCAGCTCGTCTGTGACGCGTAAAATAGCTAGAACCCTCTTATGTTCTTTCATTTTGGACATGGATTTCACATAGACAGGCAACCCTGTGGCACATACTTTTCAATTTGTTGTTTCTATACGGTTTCTAAGTGTACAGATTTTTTAACAATGGCACACGTACAATACTTACAACCTACACTGCATACATGAACATGATATTTCCCTTAACAAAAGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171618 lncRNA downstream 1223 25177452 ~ 25178607 (-) True G116242
TU171572 lncRNA downstream 97234 25079267 ~ 25082596 (-) True G116212
TU171502 lncRNA downstream 344466 24835099 ~ 24835364 (-) True G116164
TU171520 lncRNA downstream 345872 24833536 ~ 24833958 (-) True G116179
TU171515 lncRNA downstream 356420 24821501 ~ 24823410 (-) True G116174
TU171609 lncRNA upstream 20644 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA upstream 20644 25211393 ~ 25557473 (-) False G116237
XR_006252863.1 lncRNA upstream 473970 25664719 ~ 25702534 (-) False LOC122361130
XR_006252864.1 lncRNA upstream 476333 25667082 ~ 25702534 (-) True LOC122361130
TU171646 lncRNA upstream 476637 25667386 ~ 25667668 (-) False LOC122361130
XM_043260119.1 mRNA downstream 7369 25161763 ~ 25172461 (-) False pik3r4
XM_043260117.1 mRNA downstream 7369 25161763 ~ 25172461 (-) False pik3r4
XM_043260118.1 mRNA downstream 7369 25161763 ~ 25172461 (-) False pik3r4
XM_043260116.1 mRNA downstream 7369 25161763 ~ 25172461 (-) True pik3r4
XM_043261776.1 mRNA downstream 61377 25107398 ~ 25118453 (-) True capn7
XM_043260025.1 mRNA upstream 3652 25194401 ~ 25200900 (-) True pnp4b
XM_043261711.1 mRNA upstream 10202 25200951 ~ 25206208 (-) True LOC122360868
XM_043261712.1 mRNA upstream 35408 25226157 ~ 25232002 (-) True LOC122360869
XM_043261866.1 mRNA upstream 103475 25294224 ~ 25299861 (-) False LOC122360982
XM_043261865.1 mRNA upstream 103475 25294224 ~ 25299861 (-) True LOC122360982
TU171232 other downstream 851857 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1504532 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1569989 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1655448 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 2245863 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 477070 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1188923 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1616371 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1619568 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1619568 26810317 ~ 26812909 (-) False G116632

Expression Profile