RNA id: XM_043260399.1


Basic Information

Item Value
RNA id XM_043260399.1
length 2434
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC122360076
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27538393 ~ 27558972 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCTCCGGCTTCAGGAGAAAACTCCCACTTCTCTCTGAGCTCAGATCGCTGGACTTTGAAATATTCCCAGACTCTCCTGGGATTTGTGCGTTTAGACGGCACGCCGATTGTTTGTCCCTTCAGATCGAGTCGAAGGACATTAGCATCATCATGAGTAAAGAAGCCCGTCCGTCCTGGGACAGTCCCATGCAGTTTGTCCTGGCGTGCGTGTCTTATGCCGTGGGACTCGGGAACGTCTGGCGCTTTCCGTATCTCTGCCAAATGCATGGAGGAGGTGGTTTTCTGATCCCGTATCTGCTGATGTTGTTTCTGGAGGGGATTCCTCTCTTCTGTATGGAGCTGGCCATCGGTCAGAAGATGCGTCTGGGCAGCATCGGCGCATGGACGGCCATCAGCCCGTATCTGGGCGGACTGGGCATTGCCAGCGTTGTGACCTCCATGTATCTGTGTCTGTACTACAACGTCATCAACGCCTGGAGCTTCTGGTATCTCTTCCATTCATTTCAGTCGGTGCTGCCGTGGGCCGAGTGTCCCGTCAATGCGAACCGCACCGGGTATCTGGAGGAGTGCGAGGTGGCTTCGCCAACACAGTACTTCTTCTACCGCCAAACACTGAACATCTCGTCGTCCATCGATGAGAACGGAGGACTTCACATGGGTCAGGCGCTCTGTCTGCTGCTGGCCTGGATCATCGTCTACCTCTTCATCGTCAGAGGCGTCAAATCCACCGGCGTGGTGGTGTATTTCACCGCTACGTTTCCGTACGTGGTTCTGATCATTTATCTGATCCGTGGAGTCACTCTACATGGAGCCTGGAACGGAATCAAGTACATGTTCACTCCTAAAcTGGAGCAGCTGGCGAATCCTCAGACGTGGATCAACGCAGCGACTCAGATCTTCTTCTCTCTGGGTCTGGGCTTCGGTTCTCTGATAGCCTTCTCCAGTTATAATCATCATAATAATGACTTTGAGAAGCAGGCGGTGGTGGTGTCTCTCATCAACAGCGGCACGTCTGTGTTCGCCAGCATCGTCACCTTCTCCATCTACGGCTTCAAAGCCACCTTCAACTACGAGAGCTGTCTGGAAAGgacGAGGCTGCTGCTTCTCAACACGTTCGATCTGTCGGAGGAGTCAGCGTCGGGGAACGTGTCGGCCTGGATCCGTCATCTGAACATCACTGAGCCCGAGAGGTTTGCTGCCATCGCCTCAAAGATAGAGCTCTGCAGTCTGGAGGCCGAACTCGACACGGCGGTGGAGGGCACGGGTCTGGCGTTCATCGTGTACAGCGAGGCCATCAAGAACATGCCTCTGTCTCAGCTGTGGTCAGTGCTGTACTTCATCATGCTGCTGCTCTTAGGGATGGGGAGCATGCTGGGAAACGTCACGGCCATCATCACTCCGCTGTCAGACATCAAGCTCCTGTCACGCTTCCTCAGCGTCGAGACCATCAACGGTCTGGTTTGTCTTCTCTGTCTGCTGCTGGGTTTCGGTTTCGCCAGCCGTTCAGGAAACTACTGGTTCACCATCTTCAACGAATACGCCGCCACGCTGTCGCTGCTCTTCATCGTCTTCCTCGAGGTCATCAGTGTGTGTTATATCTACGGCCTGAGACGGTTCGAGAAGGACATCGAGGACATGCTGGGTCATCGGCCGAACTGGTACTGGAAGCTGATGTGGGCCGTGGTCAGTCCTCTGCTCCTCTTCAGCCTCTTCATCTTCTACATCATTAACTACATCCAGGGAGGCACGCCGACGTACCAGGCCTGGGATAAAGATCTGggccGGTCAGTGCTGAAGGAGTATCCGGTGTACGGTCAGGTGTTCATtgctctgctgctgctgtctgcTCTCAGCTGTGTGCCGCTCGCTGCTCTTCAGTCCTTCTGCAGGAGAAGACCTCTCCGTCCACGTCGTCACGTCTGACGCAAACGGCTGCGTTCATATTAATACATTCTCAGTTTTTGGGTCTCTCTCTATATTTCCTGATCAAATAATATCAGATTTTTCCTGTGAGCGTTTACGTATGATGCATTAGAATTCATATTCAAAGTTCAAATGCATTGTAATATTCAATGCATTATTCTTCCTATGTGTATGAATTATGATAATGTATTATACGTGAGATCGTGGATGCGTTGTAATGCATAAATCATGCATTGTATTCTATACAATAGCTTTATGTAAAGCGTTAACCTGCAAGAGTAAGTGTATTTATACGTCATATACAGCAGATGAATCTCTGAACTCTGAAGGGTACTGAGCGTGACTGACCGAGAATGTAAAACCGTGTAAATAACCTTTTACTGCGAAATTAATTTCgtattttgtcaaattaaattcttttatATGTCTTTGAAATGATCAGCGACTGTGATTTTTGACAGAAATATCAGTGAACTCGATGTAGCACTtgtgtatttgaaaatataata

Function

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172433 lncRNA downstream 48714 27378560 ~ 27489679 (-) False G116733
TU172434 lncRNA downstream 48714 27480300 ~ 27489679 (-) False G116733
TU172435 lncRNA downstream 48714 27480300 ~ 27489679 (-) True G116733
TU172424 lncRNA downstream 59750 27438512 ~ 27478643 (-) True G116727
TU172426 lncRNA downstream 59750 27476243 ~ 27478643 (-) False G116727
XR_006252761.1 lncRNA upstream 10992 27569964 ~ 27579866 (-) False LOC122360079
XR_006252760.1 lncRNA upstream 25682 27584654 ~ 27592026 (-) True LOC122360078
TU172536 lncRNA upstream 27931 27586903 ~ 27592021 (-) False LOC122360078
TU172568 lncRNA upstream 49240 27608212 ~ 27608965 (-) True G116812
TU172570 lncRNA upstream 53096 27612068 ~ 27612500 (-) True G116814
XM_043260087.1 mRNA downstream 156604 27375901 ~ 27381789 (-) False si:ch211-269k10.4
XM_043260088.1 mRNA downstream 156604 27375901 ~ 27381789 (-) True si:ch211-269k10.4
XM_043260797.1 mRNA downstream 280383 27242882 ~ 27258010 (-) False brd9
XM_043260796.1 mRNA downstream 280383 27242882 ~ 27258010 (-) False brd9
XM_043260795.1 mRNA downstream 280383 27242882 ~ 27258010 (-) True brd9
XM_043261498.1 mRNA upstream 54801 27613773 ~ 27621631 (-) True LOC122360683
XM_043260097.1 mRNA upstream 63657 27622629 ~ 27627516 (-) True LOC122359885
XM_043260268.1 mRNA upstream 69585 27628557 ~ 27630274 (-) True LOC122359999
XM_043261566.1 mRNA upstream 72794 27631766 ~ 27637531 (-) True LOC122360733
XM_043260929.1 mRNA upstream 126295 27685267 ~ 27690120 (-) True LOC122360378
TU172454 other downstream 177564 27358707 ~ 27360829 (-) True G116745
TU172373 other downstream 540034 26994167 ~ 26998359 (-) False LOC122360878
TU172354 other downstream 582559 26954220 ~ 26955834 (-) True G116677
TU172337 other downstream 661783 26874398 ~ 26876610 (-) True G116668
TU172263 other downstream 725419 26810317 ~ 26812974 (-) False G116632
TU172557 other upstream 64455 27623427 ~ 27627660 (-) False LOC122359885
TU172608 other upstream 148744 27707716 ~ 27727944 (-) False G116836
TU172609 other upstream 233732 27792704 ~ 27804770 (-) True G116836
TU172659 other upstream 404516 27963488 ~ 27964958 (-) True G116868

Expression Profile