RNA id: XM_043260412.1


Basic Information

Item Value
RNA id XM_043260412.1
length 1253
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC122360089
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14717064 ~ 14719580 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACAGTGAAAGTGAAGTAGAGTTCTGCTGTCTTGCAGTGAGCATCTCTACTGTATACGATGAGGACTTTTCGGTCTTTACATCTCCAACTTCTGTATCTTCTTATAACGGCTTTATTAGAATGTAAAGCTCAAAAGAAGCAAGTTCTTCAGTTGAACATAAACTCTTTCAGAGGTGACAATATGTCTATTTCTTGCCTAACCACAACTCACCCGCTAGAGTCTCTGACAGTCAAACTGCGCAGTATCAAACCGGTTAAAGACATCCTGGTGTATCCAGACATCTCTCCAGCGTCAGAGCACCAGAGATGGTCTGTGAGGAAAGAAGCTGGAAATGTTACTCTCGATCTGAAAGACATCAGATTAACAGATGATGGTCTTTATGACTGTCAGGTGTACAAGGATCAGGACTGCCTTCATGCAACTCAGTTTAACCTGAAGGTCAAAGAGTGTGAAAAATTGAACCCGGTCCATGCGACATTTAACTCTTCAGTGTTGTTGCAATGCATTGAGCATCCACGACAAAACATGACTCATCAAGTTACTTGGAAAGTCATTGTTGGTCACCAACTAACAGATATAACTCGGTATCCCCATTCAAAAAATCCTTCAAGCGGCACAGAGAAACGCTCGAATCCTCTTTATGAGAGAGCAAGACAACTAGTGAACGGATCTCTGCTTATAAGAAACGCAGTCCACGATGATGAATTGTGGTATCAGTGCAGACTGGATGAAAAATCCTGCTTCGAATTGAAGCTGCTAATAAAAGGTGCATTTCCTGAAACACTTTCCACAACATTGGAAGCCACAGTCTCTGCTGACAGTCCTTTGGTCCAGGGCGAAAGCGACATAAATGAGAGCGAATCAGAGACAGCTAGTTTGTCAGCGGTGGTGTTGACCACAGTagtgtctctgtgtctcctgATGTTACTGACCATCTGTCTCATTCtgtatttcaaaaaaagaagatgCAAAACCAACAGCCAAACGCAACTAAGTGACCGGTTCTCTGTAAATTACTCCGAAATTGTGGATGGATTTGGTGTcccattttattctttaattgaACAAAACACAGCAACTATGTGCACCTTTGTTCCTGAACAATCAGAAGCCCCTGCATGTAAACCAGACAACACGTATGAAACAagtacaggtttttttttgtgatgtcaGATTGGGAAATTGCTAATTTAGTAATTGCATGGCATCTCtcacaaattataataaagtgGAACATCTTTTATACACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166370 lncRNA downstream 1573 14715216 ~ 14715491 (-) True G112686
TU166328 lncRNA downstream 62914 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA downstream 78732 14633214 ~ 14638332 (-) True LOC122359963
TU166357 lncRNA downstream 79671 14635563 ~ 14637393 (-) False LOC122359963
TU166341 lncRNA downstream 129195 14582479 ~ 14587869 (-) True LOC122359961
TU166909 lncRNA upstream 172460 14892040 ~ 14892395 (-) True G113034
TU166910 lncRNA upstream 179602 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA upstream 179602 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166915 lncRNA upstream 227015 14946595 ~ 14947384 (-) True G113039
TU166926 lncRNA upstream 251025 14970605 ~ 14988931 (-) False si:dkey-246i14.3
XM_043260202.1 mRNA downstream 2098 14701898 ~ 14714966 (-) True tuft1a
XM_043260200.1 mRNA downstream 19976 14687731 ~ 14697088 (-) False si:dkey-92i15.4
XM_043260199.1 mRNA downstream 22255 14687731 ~ 14694809 (-) True si:dkey-92i15.4
XM_043260203.1 mRNA downstream 28896 14682828 ~ 14688168 (-) True aqp10a
XM_043260197.1 mRNA downstream 39306 14651573 ~ 14677758 (-) True atp8b2
XM_043261859.1 mRNA upstream 7505 14727085 ~ 14746625 (-) True LOC122360979
XM_043261772.1 mRNA upstream 176641 14896221 ~ 14899047 (-) True s100t
XM_043261773.1 mRNA upstream 179617 14899197 ~ 14900547 (-) False si:ch211-105c13.3
XM_043260128.1 mRNA upstream 189040 14908620 ~ 14913646 (-) True LOC122359907
XM_043261042.1 mRNA upstream 194368 14913948 ~ 14924517 (-) False pbxip1b
TU166030 other downstream 415445 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1033155 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3305287 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3430632 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3850636 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 189745 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 748900 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 748900 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 748900 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 773241 15492821 ~ 15496375 (-) True rps19

Expression Profile