RNA id: XM_043260417.1


Basic Information

Item Value
RNA id XM_043260417.1
length 3691
RNA type mRNA
GC content 0.40
exon number 9
gene id ccdc106a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8796757 ~ 8805113 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATAATAGTGTCTTTCTTCACGTTGTTTTTAGCACTGCTGCTGAGGGTcatttaattgttattgttaGGAGGCTGATTCCTCAGCAAACACGAGAACAGATGAGAGTGTGCTGAGACACGCTTCAGATACGTGACAGCGAGGCACGTTCACGGGCGAACAACGGCGAAAATATGAATGATGCGGACGCAGCCTCAAGGAAGCACGCGAGTTCCCGGGAGCTCCAGACTCCCAAGAATGAGGACGCCTATGAAATCTCCATTCCTTTCGAAGACAACAACTTCGATCAGCAGGGAGGCTTTTACAACCAGAATGACCAGAACTTTGATGGTAGCGATCCTCCAGCACCGAGCAGCTCGTACCTGTTAATCACTAACTTGCGCACGCAACTCCAGATCTCACTGGAGAAAAATTCATGGCTGCAGAAACGCATTGAGGACCTGGAGGAGGAGAGGGACTTCTTGCGCTGCCAGCTCGATCGGTTCATCTTCTCGACCAAGAGTCAGGAAAGCAACGGTAATGATTCCAGGAGTTTTTCTTGGAGAAGGAGAAGAGAAAATGATCGGGATCAACAAGTGGAGAGCCAGCGTTCAGCCAACCGTCAGTCATTCCAGCAGAGGCCAACCCAACAGACTTCAGCCAATCCCAAGGCCCTGAGCTCTGTTCCTGGTCCAGTCAATGCTCAGATAAATTCCTTGTATGGGTCTCCCCACCCCCAGCCTCTCTTACAGGGCCACGGCGGAGGCAGCACCAGCAGCAGCTGTAGTAGCAACAACAGGTCCCTCAATGAACTGCAAGAATCCCTCACTCTTCTGGGAGATGAAGAAGAGGATGACTACCTTGAGGATAGCTACCTGGAAGAAGAGGAAATGATGTCAGGAGAGGATGTGATAACAGATAACATGTCACTTCGAAATATCGGCACAGCTGGAAGACCCGCCGGCAGTCACCCGGCTCTGAAGAGGCGGAGGGTTTTCAGAATCgccagagggagagaaagacagagagtgaaAGATGCAGCAGGTGTGCTGTTCCGTTATAAAAAGATCCTGGTAACGTACCAGAGGTTAAAGAACATGTCCAAGGCCTTCCAGATCCACGGAGTAGATCGTAATACGGTGGCCTCTACCACACCCATTGCTGAGCTTCTGCTGGTGGCTCCAGAGAAGGTGGCTGAGGTGGGTGAGTTTGACCCGTCTAAAGAAAAGCTTCTGGACTACGCCCGACGCTGTTATATCGCCCTCGACCCCCAGACTCTCAGCAAAGTGCAAGCACTTAAGAAAAACAACCTCCTCCTGCCCATCTCATACAGGTTGAAAGGAACGGATAATCGATAATTGGAAGAATTAATGAGGTGATTCTTATCCTACTATGCAGTGAAACCcttcactgtattttaatgtaacataCGCCACACATCTCCCATCTCAACCTTCACATTGTGCTGTTCAGATCCACTGTACTCTGAACCAAGTGTACTATTACCTCTGTTCACTCACGCTCGAAGCTGCGGGTGGGATGCACACTTAAGCTTTCAGGTTTGGTATATTAAAAGAGAACTTGCTTCTCAAACCCATTTTACACCATCCTTTCATATCGGAATTTTTAGTATCGTTTAATATTGTCGCTTTACTTTCCATTCTTTGTGATGTGTAGCTCTATAACAGTGTGTGTTGCTCAGAAGATCTGTTGGGTCTTTAGGTCCGCTCAGTTGTCCCAAGCGTGTGTCCTGATTCTCCGTGTCTCATAGCAGTTACTTGACAGCCTGAAAGACTTTTGAAATAGAGGTTCTTCTAAAAAATGGTGCACGCGTAGACCCATGCACTCCTCCTATTTTAACACTGTGCTACTCTTTGCAAGCGGCACCCGTACGTTCTCAGTAGAACCTTTTTGGATATGATTTGTGgagtgtttgtgcatgtgtctCCCTTAATCATGGCCTGTCTCCTATTAGATGACACTGACTGTTCAGCATGTGCAAAGTTTTATATAGTGTAAATCAGTGATACTACATGTTAAAACAGCTGGTAATAGTACTAGTCTGGTCTAGTCTAGTACAGCGTAGTGCAGATGATAATGTTAGGAGAGGAAATGAGTGCAGAGATGTCCCTGTTCTACCTGGTGCTGAAGTTCtcatgagagtgtgtgtgtgtgagtgtgtgtgtgtgtgtggatttcaccGTCTATGTCTGGATGCATGTTGGATGTTTGTTAACGTGTGGCACGCTTGAGGTTAGACTACTCATGGCTCTTTCGAGCACATATTGAAACCTCCAGTGGCTAATAAAAAACAGCAAGTTTCTCTTTATATCACAATTTTCTTCTTCCTTACCATCAGataatatttgttaacattagttaatacattaGATATCATAAACTAAAATGAAGAACATTTACTATTGTTCAGTGTTGGTTTATTCCCGTTTATAcccatgaaaaataaatatactacgatgcatttaaaatgcaattatttcatgctaagtgtaccaaatatacttatatattataaatattacatatttatgtaagtATACTTAAAGTCTGCTGAAACGCAACAACTCATTTTGTGCTTAATGTAATTGTCCGGTCTAAGTAAAGATATaatgaagtatatttgattgcAAAATTGCGGTACgctttaaatatcttttatttaaataccaaTATTAAGAGCATACAATCTTAAATAGTGACGTTAAAAGAAGTTTAAGCTTAATGTTAAGAAATGTGAGTTGTACAGCAGTAGTACTCCAAAAAGagtttaattctaatttttatATCAGCGTCTTGAGTGATGTGTCagtaaatatatgtatagattTGGACTATACtaagaatgaaataaatgtattttaaatagcacTTTTTACTAGGgtgatatattatttataaaacctgaaattcaaaaaaactaaacaaaaaatgattctACGTATAAATGAACACTAACCtgaatttaatgttaaatgtattttttttgttagttcatgatacttaattaactaatgttaacaaatcaaACCCAATTGAGAAGAGTTACTGTATTTGCATTATCTTGTACTTTCATTGTCATTTTCCTGTCTGCTACTATTAATTACGGGTCAGGGCTGAAGGTGATTTGAATTTCACCTCAGGAACCAATCATTTCCAGTACAGGTTAGTTTATCGCAAAACCATTTTCCActgttgtggtttttttttttttttcctctccataTAACCAAGAAGCTGTTTATATAGCCTGTACTATTTTGTCactaaaagaaacattaatgAAATGTTCATTGATTCTTCATATTGTAAATCACACTAAAGCATTTGATTTCCTACTGAATCCTGTGCCACTCCGCTCTTTAATTCTGATTCTTCTTAAGGTCTTGTTATCTAATAGCATTCCCATAATTTGTCATAATGCACTTAAGACTAAAACCCCATCTGCTAAATAATGACATGTTCTTTGAGGAAACtaattatctgtttatttttaaagcacattacAGTCATATGCTAATCGGTTTGAACAGGAAGCAAAGATGGAATTGTtccataaaaaacataatacttttagcatttatgttaaaaacaaccTATATTATGTACATTGGGTATTGTACACTTTTTGGTCCTAAAAAGTAGCCATCTATAATTCTTGATCCTAAATAAAATTTGCACTTTGTTGAAGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 206123 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 245205 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 245205 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 557581 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 560964 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 40412 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 195674 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 199425 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 202184 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 226022 9031135 ~ 9031449 (-) True G110852
XM_043261437.1 mRNA downstream 16734 8774595 ~ 8780023 (-) True m6pr
XM_043261829.1 mRNA downstream 29548 8759127 ~ 8767209 (-) False casp2
XM_043261827.1 mRNA downstream 29548 8759127 ~ 8767209 (-) False casp2
XM_043261828.1 mRNA downstream 29548 8759127 ~ 8767209 (-) False casp2
XM_043261826.1 mRNA downstream 29548 8759127 ~ 8767209 (-) True casp2
XM_043261271.1 mRNA upstream 16552 8821665 ~ 8833880 (-) True si:dkey-17m8.1
XM_043261662.1 mRNA upstream 29586 8834699 ~ 8835602 (-) True LOC122360801
XM_043262104.1 mRNA upstream 36381 8841494 ~ 8844824 (-) True zgc:174935
XM_043262059.1 mRNA upstream 52351 8857464 ~ 8862529 (-) True LOC122361100
XM_043261561.1 mRNA upstream 133434 8938547 ~ 8944648 (-) False tapbpl
XR_006252934.1 other downstream 149202 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 160535 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 480072 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 494512 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 580162 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 340817 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 465858 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 1941680 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 2056838 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 2056838 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile